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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005995

染色体: Chr01 坐标: 75543753-75546641 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005995
名称SmilChr01G005995
描述receptor like protein 22-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向75543753 - 75546641 / -

ID 对照

NCBI Gene IDLOC131006266
GeneID131006266
locus_tag-
NCBI NameLOC131006266
原始查询SmilChr01G005995

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor like protein 22-like
产物receptor like protein 22-like
ArabidopsisAT2G32660 (RLP22)
receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826]
identity=37.5; qcov=0.877; evalue=1.02e-64; confidence=medium
RiceOs01g0132100
-
identity=40.8; qcov=0.897; evalue=7.05e-84; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131006266

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057789437.1
2 Nucleus 细胞核 0.00000 XP_057789437.1
3 Chromosome 染色体 0.00000 XP_057789437.1
4 Centromere 着丝粒 0.00000 XP_057789437.1
5 Chromatin 染色质 0.00000 XP_057789437.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:75545111 C T EMS_canonical_SNV CDS_variant 2 A14,C19
Chr1:75545126 G A EMS_canonical_SNV CDS_variant 1 A14
Chr1:75545134 C T EMS_canonical_SNV CDS_variant 1 B27
Chr1:75545135 G A EMS_canonical_SNV CDS_variant 2 B113,C22
Chr1:75545139 C T EMS_canonical_SNV CDS_variant 3 C52,C65,C9
Chr1:75545150 G A EMS_canonical_SNV CDS_variant 2 B2,D9
Chr1:75545213 G A EMS_canonical_SNV CDS_variant 5 A13,B29,B42,B43,D1
Chr1:75545323 G A EMS_canonical_SNV CDS_variant 5 A6,B41,B60,B82,C49
Chr1:75545354 G A EMS_canonical_SNV CDS_variant 1 C34
Chr1:75545361 C T EMS_canonical_SNV CDS_variant 5 A22,C26,C34,C56,C65
Chr1:75545414 G A EMS_canonical_SNV CDS_variant 3 A21,B55,B73
Chr1:75545434 C T EMS_canonical_SNV CDS_variant 2 B46,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789437.1
524 aa
N
1
262
524
LRRNT_2
LRR_1
LRR_6
LRR_1
LRR_6
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
LRR_6
LRR_1
LRR_6
C
PF08263 LRRNT_2 29-70 aa PF00560 LRR_1 101-122 aa PF13516 LRR_6 148-162 aa PF00560 LRR_1 149-171 aa PF13516 LRR_6 196-209 aa PF00560 LRR_1 198-221 aa PF13516 LRR_6 243-258 aa PF00560 LRR_1 244-264 aa PF00560 LRR_1 293-309 aa PF00560 LRR_1 339-359 aa PF13516 LRR_6 362-377 aa PF13855 LRR_8 363-423 aa PF00560 LRR_1 364-382 aa PF00560 LRR_1 388-409 aa PF13516 LRR_6 410-425 aa PF00560 LRR_1 413-434 aa PF13516 LRR_6 433-449 aa
XP_057789438.1
508 aa
N
1
254
508
LRRNT_2
LRR_1
LRR_6
LRR_8
LRR_1
LRR_6
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
LRR_6
LRR_1
LRR_6
C
PF08263 LRRNT_2 29-70 aa PF00560 LRR_1 101-122 aa PF13516 LRR_6 148-162 aa PF13855 LRR_8 148-209 aa PF00560 LRR_1 149-171 aa PF13516 LRR_6 196-209 aa PF00560 LRR_1 198-221 aa PF13516 LRR_6 243-258 aa PF00560 LRR_1 244-264 aa PF00560 LRR_1 293-309 aa PF00560 LRR_1 339-359 aa PF13516 LRR_6 362-377 aa PF13855 LRR_8 363-423 aa PF00560 LRR_1 364-382 aa PF00560 LRR_1 388-409 aa PF13516 LRR_6 410-425 aa PF00560 LRR_1 413-434 aa PF13516 LRR_6 433-449 aa
XP_057789439.1
505 aa
N
1
252
505
LRRNT_2
LRR_1
LRR_6
LRR_8
LRR_1
LRR_6
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
LRR_6
LRR_1
LRR_6
C
PF08263 LRRNT_2 29-70 aa PF00560 LRR_1 101-122 aa PF13516 LRR_6 148-162 aa PF13855 LRR_8 148-209 aa PF00560 LRR_1 149-171 aa PF13516 LRR_6 196-209 aa PF00560 LRR_1 198-221 aa PF13516 LRR_6 243-258 aa PF00560 LRR_1 244-264 aa PF00560 LRR_1 293-309 aa PF00560 LRR_1 339-359 aa PF13516 LRR_6 362-377 aa PF13855 LRR_8 363-423 aa PF00560 LRR_1 364-382 aa PF00560 LRR_1 388-409 aa PF13516 LRR_6 410-425 aa PF00560 LRR_1 413-434 aa PF13516 LRR_6 433-449 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789437.1 Pfam PF08263 LRRNT_2 Family 29 70 3.6e-09 37.5 Leucine rich repeat N-terminal domain
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 101 122 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 148 162 3.6e-13 49.2 Leucine Rich repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 149 171 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 196 209 3.6e-13 49.2 Leucine Rich repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 198 221 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 243 258 3.6e-13 49.2 Leucine Rich repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 244 264 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 293 309 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 339 359 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 362 377 3.6e-13 49.2 Leucine Rich repeat
XP_057789437.1 Pfam PF13855 LRR_8 Repeat 363 423 3.9e-28 97.7 Leucine rich repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 364 382 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 388 409 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 410 425 3.6e-13 49.2 Leucine Rich repeat
XP_057789437.1 Pfam PF00560 LRR_1 Repeat 413 434 7e-37 118.2 Leucine Rich Repeat
XP_057789437.1 Pfam PF13516 LRR_6 Repeat 433 449 3.6e-13 49.2 Leucine Rich repeat
XP_057789438.1 Pfam PF08263 LRRNT_2 Family 29 70 3.4e-09 37.5 Leucine rich repeat N-terminal domain
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 101 122 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 148 162 2.3e-13 49.8 Leucine Rich repeat
XP_057789438.1 Pfam PF13855 LRR_8 Repeat 148 209 4.7e-28 97.4 Leucine rich repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 149 171 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 196 209 2.3e-13 49.8 Leucine Rich repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 198 221 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 243 258 2.3e-13 49.8 Leucine Rich repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 244 264 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 293 309 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 339 359 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 362 377 2.3e-13 49.8 Leucine Rich repeat
XP_057789438.1 Pfam PF13855 LRR_8 Repeat 363 423 4.7e-28 97.4 Leucine rich repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 364 382 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 388 409 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 410 425 2.3e-13 49.8 Leucine Rich repeat
XP_057789438.1 Pfam PF00560 LRR_1 Repeat 413 434 3.8e-37 119.0 Leucine Rich Repeat
XP_057789438.1 Pfam PF13516 LRR_6 Repeat 433 449 2.3e-13 49.8 Leucine Rich repeat
XP_057789439.1 Pfam PF08263 LRRNT_2 Family 29 70 3.4e-09 37.5 Leucine rich repeat N-terminal domain
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 101 122 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 148 162 2.1e-13 49.9 Leucine Rich repeat
XP_057789439.1 Pfam PF13855 LRR_8 Repeat 148 209 5.4e-28 97.2 Leucine rich repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 149 171 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 196 209 2.1e-13 49.9 Leucine Rich repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 198 221 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 243 258 2.1e-13 49.9 Leucine Rich repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 244 264 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 293 309 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 339 359 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 362 377 2.1e-13 49.9 Leucine Rich repeat
XP_057789439.1 Pfam PF13855 LRR_8 Repeat 363 423 5.4e-28 97.2 Leucine rich repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 364 382 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 388 409 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 410 425 2.1e-13 49.9 Leucine Rich repeat
XP_057789439.1 Pfam PF00560 LRR_1 Repeat 413 434 3.4e-37 119.1 Leucine Rich Repeat
XP_057789439.1 Pfam PF13516 LRR_6 Repeat 433 449 2.1e-13 49.9 Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057933454.1
CCAAGTCTTTCTAGTGGTAGCTTTAAAGCCCAAAATATACAACATTTATGTGTATAGAGAGCATCATCACTCACAAATCACAATGCTAATTTATCTGCTTCTTCATTTTCTCACCATCTCTTTAATTTCATCTGCAAATTTGACTGATGCATACAAGCAATGCCTCCATCACCAGAAAACACTGTTACTTGAGCTGAAGAGCAACTTAACGTTCGATTCTTCCATTTCAAGAAAACTAGTGCAGTGGAATCAAACCGATG...
XM_057933456.1
GCATCATCACTCACAAATCACAATGCTAATTTATCTGCTTCTTCATTTTCTCACCATCTCTTTAATTTCATCTGCAAATTTGACTGATGCATACAAGCAATGCCTCCATCACCAGAAAACACTGTTACTTGAGCTGAAGAGCAACTTAACGTTCGATTCTTCCATTTCAAGAAAACTAGTGCAGTGGAATCAAACCGATGATTGCTGCGAGTGGGAAGGCGTGGAATGCGACGCTGCAGGCCGTGTTATAAATTTGCAGC...

CDS

3 records

下载 CDS FASTA
LOC131006266
ATGCTAATTTATCTGCTTCTTCATTTTCTCACCATCTCTTTAATTTCATCTGCAAATTTGACTGATGCATACAAGCAATGCCTCCATCACCAGAAAACACTGTTACTTGAGCTGAAGAGCAACTTAACGTTCGATTCTTCCATTTCAAGAAAACTAGTGCAGTGGAATCAAACCGATGATTGCTGCGAGTGGGAAGGCGTGGAATGCGACGCTGCAGGCCGTGTTATAAATTTGCAGCTCGACTACGAGTCTCTTTCAGG...
LOC131006266
ATGCTAATTTATCTGCTTCTTCATTTTCTCACCATCTCTTTAATTTCATCTGCAAATTTGACTGATGCATACAAGCAATGCCTCCATCACCAGAAAACACTGTTACTTGAGCTGAAGAGCAACTTAACGTTCGATTCTTCCATTTCAAGAAAACTAGTGCAGTGGAATCAAACCGATGATTGCTGCGAGTGGGAAGGCGTGGAATGCGACGCTGCAGGCCGTGTTATAAATTTGCAGCTCGACTACGAGTCTCTTTCAGG...

Protein

3 records

下载 Protein FASTA
XP_057789437.1
MLIYLLLHFLTISLISSANLTDAYKQCLHHQKTLLLELKSNLTFDSSISRKLVQWNQTDDCCEWEGVECDAAGRVINLQLDYESLSGTIEKLSTLSKLMYLERLNLAYNSLNGSIPLSLFHLPLLQQLKLSNNNFSGHVDEFPSLTLSHLEELDLSSNHLQGPIPDSLFKLQSLQLLSLANNLFNGTFQLSKIRKLPNLTTLDLSHNNLYVDASSISSSFPQLYQLSLVSCNLSSFPNLRNQSNLRFLDLSNNRIGGEIP...
XP_057789438.1
MLIYLLLHFLTISLISSANLTDAYKQCLHHQKTLLLELKSNLTFDSSISRKLVQWNQTDDCCEWEGVECDAAGRVINLQLDYESLSGTIEKLSTLSKLMYLERLNLAYNSLNGSIPLSLFHLPLLQQLKLSNNNFSGHVDEFPSLTLSHLEELDLSSNHLQGPIPDSLFKLQSLQLLSLANNLFNGTFQLSKIRKLPNLTTLDLSHNNLYVDASSISSSFPQLYQLSLVSCNLSSFPNLRNQSNLRFLDLSNNRIGGEIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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