Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006024`

染色体: Chr01 坐标: 75812618-75817428 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006024`
名称	SmilChr01G006024
描述	uncharacterized SmilChr01G006024
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75812618 - 75817428 / `-`

ID 对照

NCBI Gene ID	`LOC131006280`
GeneID	`131006280`
locus_tag	`-`
NCBI Name	`LOC131006280`
原始查询	`SmilChr01G006024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844015]; symbol=AT1G76810; hit=AT1G76810; species=arabidopsis; confidence=high
产物	eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844015]; symbol=AT1G76810; hit=AT1G76810; species=arabidopsis; confidence=high
Arabidopsis	`AT1G76810` (AT1G76810) eukaryotic translation initiation factor 2 (eIF-2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844015] identity=59.2; qcov=0.987; evalue=0; confidence=high
Rice	`Os05g0592600` - identity=60.8; qcov=0.972; evalue=0; confidence=high
GO	GO:0003743 (translation initiation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding)
KEGG	-
Pfam	PF00009 (GTP_EFTU); PF01926 (MMR_HSR1); PF11987 (IF-2); PF14578 (GTP_EFTU_D4)
InterPro	-
eggNOG	-
NR	GeneID:131006280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057789455.1`
2	Cytosol	细胞质基质	0.80000	`XP_057789455.1`
3	Nucleus	细胞核	0.00000	`XP_057789455.1`
4	Chromosome	染色体	0.00000	`XP_057789455.1`
5	Centromere	着丝粒	0.00000	`XP_057789455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75813626`	`AGC`	`A`	2bp_deletion	frameshift_variant	117	A14,A15,A16,A24,A25,A3,A6,A7,A9,B100,B104,B106,B108,B110,B112,B115,B117,B119,B12,B120,B121,B123,B124,B125,B127,B129,B130,B131,B132,B135,B136,B137,B138,B14,B15,B17,B18,B20,B24,B28,B29,B3,B31,B32,B34,B4,B40,B41,B44,B45,B46,B47,B54,B55,B57,B62,B63,B64,B65,B66,B70,B71,B73,B78,B8,B82,B84,B86,B9,B90,B92,B93,B95,C10,C12,C15,C16,C17,C18,C19,C23,C24,C25,C26,C27,C3,C31,C33,C34,C37,C39,C41,C42,C43,C44,C45,C5,C50,C51,C53,C55,C56,C58,C6,C66,C70,C72,C73,C77,C78,C84,C86,C87,C9,D3,D8,D9
`Chr1:75813632`	`C`	`CAA`	2bp_insertion	frameshift_variant	116	A14,A15,A16,A24,A25,A3,A5,A6,A9,B100,B104,B106,B110,B112,B115,B117,B119,B12,B120,B121,B123,B124,B125,B127,B129,B130,B131,B132,B135,B136,B137,B138,B14,B15,B17,B18,B20,B24,B28,B29,B3,B31,B32,B34,B4,B40,B41,B44,B45,B46,B47,B54,B55,B57,B62,B63,B64,B65,B66,B70,B71,B73,B78,B8,B82,B84,B86,B9,B90,B92,B93,B95,C10,C12,C14,C15,C16,C17,C18,C19,C23,C24,C25,C26,C27,C3,C31,C33,C34,C37,C39,C41,C42,C43,C44,C45,C5,C50,C51,C53,C55,C56,C58,C6,C66,C72,C73,C77,C78,C84,C86,C87,C9,D3,D8,D9
`Chr1:75813684`	`T`	`TC`	1bp_insertion	frameshift_variant	3	B106,B28,C31
`Chr1:75813684`	`T`	`TC`	1bp_insertion	CDS_variant	3	B106,B28,C31
`Chr1:75813688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,B32,B45,B92
`Chr1:75813712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B101,B2,C59
`Chr1:75814097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B17,C48
`Chr1:75815115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr1:75815126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:75815525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:75815878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C71
`Chr1:75816086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789455.1

900 aa

450

900

GTP_EFTU

MMR_HSR1

IF-2

GTP_EFTU_D4

PF00009 GTP_EFTU 311-520 aa PF01926 MMR_HSR1 314-434 aa PF11987 IF-2 633-748 aa PF14578 GTP_EFTU_D4 776-859 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789455.1`	Pfam	`PF00009`	GTP_EFTU	Domain	311	520	2.7e-32	112.6	Elongation factor Tu GTP binding domain
`XP_057789455.1`	Pfam	`PF01926`	MMR_HSR1	Family	314	434	2.8e-07	31.4	50S ribosome-binding GTPase
`XP_057789455.1`	Pfam	`PF11987`	IF-2	Domain	633	748	2.6e-23	82.9	Translation-initiation factor 2
`XP_057789455.1`	Pfam	`PF14578`	GTP_EFTU_D4	Domain	776	859	3.4e-10	40.4	Elongation factor Tu domain 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933472.1
TCAAGATCGACACATTGCGTCTCTAAAACCCTACTAGCATCGGAGCAATCGTCGATTAGTTTGGTCTGTAAACCCTAGTTCTTCAAAATTGTGTCCTCGTTTCAAAATTGTTCATCAAATTTTTTGTAATCCGATGGATACAGTTGCGCGCGGTTGCGAAAGTGGTATCGATTCTGTGTTTGGTGATGATGTAAGTGGGGAAGCGAATCAATCTATGTTGAAAGTGCAAAAAGAGGAGGGGGCTGTTGTTGTTGCTGCTG...

CDS

1 records

下载 CDS FASTA

LOC131006280
ATGGATACAGTTGCGCGCGGTTGCGAAAGTGGTATCGATTCTGTGTTTGGTGATGATGTAAGTGGGGAAGCGAATCAATCTATGTTGAAAGTGCAAAAAGAGGAGGGGGCTGTTGTTGTTGCTGCTGCGGGGGTGAAGAAGAAGAAAAAGAAAAAGAAGATGGACGCCGGTAAAGAGAACAACATGCTACATGTTTCTGCAGTGGAAGAAAAAGTTGGATCGGTTAAGAAAGTTCCAAAGCATGTGAAGGAGATACAGGA...

Protein

1 records

下载 Protein FASTA

XP_057789455.1
MDTVARGCESGIDSVFGDDVSGEANQSMLKVQKEEGAVVVAAAGVKKKKKKKKMDAGKENNMLHVSAVEEKVGSVKKVPKHVKEIQERLSKLREAEERRKREYEEKLMKEEEERLKQEELERLAQEKKRLKKEREKEKLLKKRKEGKLLTAKQKEEARRLESMRKHILANANLDSSTAAAAVGKRIRYQNKVSKPIDQSVEAAISDLKEIQQDVESELELDSVERVESSSSHEEVIDALDDDQEWDAKNWDCVDLKLQDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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