当前解析结果
SmilChr01G006033| 统一新 Gene ID | SmilChr01G006033 |
|---|---|
| 名称 | SmilChr01G006033 |
| 描述 | acyl-CoA-binding domain-containing protein 6 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75858520 - 75864233 / + |
| NCBI Gene ID | LOC131006290 |
|---|---|
| GeneID | 131006290 |
| locus_tag | - |
| NCBI Name | LOC131006290 |
| 原始查询 | SmilChr01G006033 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyl-CoA-binding domain-containing protein 6 |
| 产物 | acyl-CoA-binding domain-containing protein 6 |
| Arabidopsis | AT5G04420 (AT5G04420)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830321] identity=57.4; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0822800- identity=50.1; qcov=0.982; evalue=7.37e-168; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01344 (Kelch_1); PF07646 (Kelch_2); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24922 (ACBP4_C); PF24981 (Beta-prop_ATRN-LZTR1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006290 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057789470.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057789470.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057789470.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057789470.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057789470.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75859429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:75860338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B85,C58 |
Chr1:75860972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:75862452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr1:75863206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,D7 |
Chr1:75863314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:75863743 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B21 |
Chr1:75863743 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B21 |
Chr1:75863830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr1:75863831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789470.1PF24681
Kelch_KLHDC2_KLHL20_DRC7 6-72 aa
PF24981
Beta-prop_ATRN-LZTR1 7-149 aa
PF01344
Kelch_1 29-69 aa
PF07646
Kelch_2 30-69 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 95-302 aa
PF01344
Kelch_1 143-185 aa
PF07646
Kelch_2 144-183 aa
PF24981
Beta-prop_ATRN-LZTR1 157-323 aa
PF01344
Kelch_1 198-235 aa
PF24922
ACBP4_C 390-492 aa
XP_057789471.1PF24681
Kelch_KLHDC2_KLHL20_DRC7 6-72 aa
PF24981
Beta-prop_ATRN-LZTR1 7-149 aa
PF01344
Kelch_1 29-69 aa
PF07646
Kelch_2 30-69 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 95-302 aa
PF01344
Kelch_1 143-185 aa
PF07646
Kelch_2 144-183 aa
PF24981
Beta-prop_ATRN-LZTR1 157-323 aa
PF01344
Kelch_1 198-235 aa
PF24922
ACBP4_C 390-492 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789470.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 6 | 72 | 1.5e-69 | 234.4 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057789470.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 7 | 149 | 3.1e-41 | 142.3 | Attractin/LZTR1 beta-propeller |
XP_057789470.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 29 | 69 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789470.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 30 | 69 | 3.1e-22 | 78.0 | Kelch motif |
XP_057789470.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 95 | 302 | 1.5e-69 | 234.4 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057789470.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 143 | 185 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789470.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 144 | 183 | 3.1e-22 | 78.0 | Kelch motif |
XP_057789470.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 157 | 323 | 3.1e-41 | 142.3 | Attractin/LZTR1 beta-propeller |
XP_057789470.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 198 | 235 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789470.1 |
Pfam | PF24922 |
ACBP4_C | Domain | 390 | 492 | 3e-33 | 114.9 | Acyl-CoA-binding domain-containing protein 4-6, C-terminal |
XP_057789471.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 6 | 72 | 1.5e-69 | 234.4 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057789471.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 7 | 149 | 3.1e-41 | 142.3 | Attractin/LZTR1 beta-propeller |
XP_057789471.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 29 | 69 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789471.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 30 | 69 | 3.1e-22 | 78.0 | Kelch motif |
XP_057789471.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 95 | 302 | 1.5e-69 | 234.4 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057789471.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 143 | 185 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789471.1 |
Pfam | PF07646 |
Kelch_2 | Repeat | 144 | 183 | 3.1e-22 | 78.0 | Kelch motif |
XP_057789471.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 157 | 323 | 3.1e-41 | 142.3 | Attractin/LZTR1 beta-propeller |
XP_057789471.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 198 | 235 | 9.1e-29 | 99.3 | Kelch motif |
XP_057789471.1 |
Pfam | PF24922 |
ACBP4_C | Domain | 390 | 492 | 3e-33 | 114.9 | Acyl-CoA-binding domain-containing protein 4-6, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。