Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006059`

染色体: Chr01 坐标: 76042663-76046903 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006059`
名称	SmilChr01G006059
描述	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	76042663 - 76046903 / `+`

ID 对照

NCBI Gene ID	`LOC131006310`
GeneID	`131006310`
locus_tag	`-`
NCBI Name	`LOC131006310`
原始查询	`SmilChr01G006059`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
产物	putative ribosomal large subunit pseudouridine synthase SVR1%2C chloroplastic
Arabidopsis	`AT2G39140` (SVR1) pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818500] identity=64.4; qcov=0.934; evalue=2.57e-160; confidence=high
Rice	`Os03g0152700` - identity=58.1; qcov=0.939; evalue=3.03e-129; confidence=high
GO	GO:0000488 (maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)); GO:0000489 (maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)); GO:0001522 (pseudouridine synthesis); GO:0003723 (RNA binding); GO:0009507 (chloroplast); GO:0009982 (pseudouridine synthase activity); GO:0032544 (plastid translation)
KEGG	-
Pfam	PF00849 (PseudoU_synth_2); PF01479 (S4)
InterPro	-
eggNOG	-
NR	GeneID:131006310

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057789486.1`
2	Nucleus	细胞核	0.00000	`XP_057789486.1`
3	Chromosome	染色体	0.00000	`XP_057789486.1`
4	Centromere	着丝粒	0.00000	`XP_057789486.1`
5	Chromatin	染色质	0.00000	`XP_057789486.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:76043132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B33,B61,B79,B87
`Chr1:76043366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C48,C84
`Chr1:76044874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B103,B38,B39,C8
`Chr1:76044901`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C5
`Chr1:76044966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B42,B43,B93,C75
`Chr1:76045708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:76046194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:76046504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789486.1

398 aa

199

398

PseudoU_synth_2

PF01479 S4 148-192 aa PF00849 PseudoU_synth_2 211-353 aa

XP_057789487.1

379 aa

190

379

PseudoU_synth_2

PF01479 S4 148-192 aa PF00849 PseudoU_synth_2 211-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789486.1`	Pfam	`PF01479`	S4	Domain	148	192	2.2e-13	50.4	S4 domain
`XP_057789486.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	211	353	3.4e-19	70.3	RNA pseudouridylate synthase
`XP_057789487.1`	Pfam	`PF01479`	S4	Domain	148	192	2e-13	50.6	S4 domain
`XP_057789487.1`	Pfam	`PF00849`	PseudoU_synth_2	Family	211	353	3e-19	70.5	RNA pseudouridylate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933504.1
TAGGATAATTATTTAATTAAAAGAACTAAACGAAAAAAGTAATGTTACAAATTCTTCATTCTTTCCTTAATCTTTTCGTATAAAATTTTACCTATAAATTATCCAAATTTTATCAAATTTTAATTTGGAGAAATGAAAATTACAAACTCTAAGATTCTTTTTTTTTTTAATAGTAACGGCCAACGGAAATGTATAAATAAATTACGAATTTTATCTTTAAAGTCACTGAACAGCGAGACTGATTTCAATCCGCCATCTAC...

XM_057933503.1
TTCTTTTTTTTTTTAATAGTAACGGCCAACGGAAATGTATAAATAAATTACGAATTTTATCTTTAAAGTCACTGAACAGCGAGACTGATTTCAATCCGCCATCTACCACCGCGAAATGGCGGCGATAGCAGCGGCAGCGACCGCGTTCTCAACGCTCCATCTCTCTAGAACCTCCATCATCCTCCCCCGCCGCCACCTCCGAACAGTGATTACCTCCTCTCTCTCATCCACCGACATCAACATCAAATTCGCCCCGCCCA...

CDS

2 records

下载 CDS FASTA

LOC131006310
ATGGCGGCGATAGCAGCGGCAGCGACCGCGTTCTCAACGCTCCATCTCTCTAGAACCTCCATCATCCTCCCCCGCCGCCACCTCCGAACAGTGATTACCTCCTCTCTCTCATCCACCGACATCAACATCAAATTCGCCCCGCCCAAACATAAACCGCAATTGCAGAAATCCTCGCCGCTCGCTTCAGCCTCCGCGGAATCGGAACCCGCAGACCCGGTCTACATCCCCTGGATTGTCAGTGACGAGAACGGCAATGTCAA...

Protein

2 records

下载 Protein FASTA

XP_057789486.1
MAAIAAAATAFSTLHLSRTSIILPRRHLRTVITSSLSSTDINIKFAPPKHKPQLQKSSPLASASAESEPADPVYIPWIVSDENGNVKLQSTPSERFLRAIAHESTQKKKKKDDRSSVGKAKPGVPTAEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSCEELIFQGKVTVNGSVCNTPQTRVDPAQDIIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKTWNKRNPGTPKPRLFTVGR...

XP_057789487.1
MAAIAAAATAFSTLHLSRTSIILPRRHLRTVITSSLSSTDINIKFAPPKHKPQLQKSSPLASASAESEPADPVYIPWIVSDENGNVKLQSTPSERFLRAIAHESTQKKKKKDDRSSVGKAKPGVPTAEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSCEELIFQGKVTVNGSVCNTPQTRVDPAQDIIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEKETKSALSLFDDFMKTWNKRNPGTPKPRLFTVGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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