当前解析结果
SmilChr01G006064| 统一新 Gene ID | SmilChr01G006064 |
|---|---|
| 名称 | SmilChr01G006064 |
| 描述 | ACT domain-containing protein ACR10-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76063118 - 76066924 / + |
| NCBI Gene ID | LOC131006316 |
|---|---|
| GeneID | 131006316 |
| locus_tag | - |
| NCBI Name | LOC131006316 |
| 原始查询 | SmilChr01G006064 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACT domain-containing protein ACR10-like |
| 产物 | ACT domain-containing protein ACR10-like |
| Arabidopsis | AT2G36840 (ACR10)ACT-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818257] identity=60.7; qcov=1.01; evalue=7.69e-179; confidence=high |
| Rice | Os09g0570900 (B1331F11.3-1)- identity=57.1; qcov=1.04; evalue=1.76e-167; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF24914 (ACR10_N); PF24926 (ACT_ACR9_C); PF24931 (ACT_ACR9_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789500.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057789500.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057789500.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789500.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76064375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,D11,D7 |
Chr1:76064403 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C34 |
Chr1:76064403 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C34 |
Chr1:76064417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr1:76064939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:76064991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr1:76065954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:76065980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:76065982 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | A6,B64,B76,C4 |
Chr1:76065982 |
A |
AT |
1bp_insertion | CDS_variant | 4 | A6,B64,B76,C4 |
Chr1:76066097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B103 |
Chr1:76066279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789500.1PF24914
ACR10_N 12-86 aa
PF24931
ACT_ACR9_3rd 234-331 aa
PF24926
ACT_ACR9_C 332-410 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789500.1 |
Pfam | PF24914 |
ACR10_N | Domain | 12 | 86 | 1.3e-42 | 143.8 | ACT domain-containing protein ACR10, N-terminal |
XP_057789500.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 234 | 331 | 1.3e-58 | 195.8 | ACR9-like, ACT-like domain |
XP_057789500.1 |
Pfam | PF24926 |
ACT_ACR9_C | Domain | 332 | 410 | 1.4e-39 | 134.5 | ACT domain-containing protein ACR9, C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。