当前解析结果
SmilChr01G006067| 统一新 Gene ID | SmilChr01G006067 |
|---|---|
| 名称 | SmilChr01G006067 |
| 描述 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FERN, mitochondrial-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76077354 - 76078168 / + |
| NCBI Gene ID | LOC131006318 |
|---|---|
| GeneID | 131006318 |
| locus_tag | - |
| NCBI Name | LOC131006318 |
| 原始查询 | SmilChr01G006067 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FERN, mitochondrial-like |
| 产物 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FERN%2C mitochondrial-like |
| Arabidopsis | AT5G60335 (AT5G60335)hydroxyacyl-thioester dehydratase type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:10723110] identity=55.2; qcov=0.77; evalue=2.43e-22; confidence=medium |
| Rice | Os05g0185700 (OJ1111_A10.13)- identity=45.6; qcov=0.782; evalue=6.08e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006318 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057789502.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057789502.1 |
| 3 | Chloroplast | 叶绿体 | 0.40000 | XP_057789502.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057789502.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057789502.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76077662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:76077696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:76077712 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A18,A6,B121,B3,B64,B76,B9,C4,C6 |
Chr1:76077716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr1:76077720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C76 |
Chr1:76077733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:76077882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C27 |
Chr1:76077883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,A7,B103,B35,D3 |
Chr1:76077895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B119,B7,B94,C45,C50 |
Chr1:76077925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:76077939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。