当前解析结果
SmilChr01G006088| 统一新 Gene ID | SmilChr01G006088 |
|---|---|
| 名称 | SmilChr01G006088 |
| 描述 | putative receptor like protein 25 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76372233 - 76373349 / + |
| NCBI Gene ID | LOC131013951 |
|---|---|
| GeneID | 131013951 |
| locus_tag | - |
| NCBI Name | LOC131013951 |
| 原始查询 | SmilChr01G006088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor like protein 25 |
| 产物 | putative receptor like protein 25 |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=43.9; qcov=0.917; evalue=5.31e-60; confidence=medium |
| Rice | Os12g0221700- identity=43.2; qcov=0.878; evalue=6.45e-60; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013951 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797873.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797873.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797873.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797873.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797873.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76372248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr1:76372262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:76372263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B79,C64 |
Chr1:76372265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:76372306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B16 |
Chr1:76372313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:76372384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B111 |
Chr1:76372430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B65,B69,C24 |
Chr1:76372454 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | B65,B69 |
Chr1:76372454 |
TGA |
T |
2bp_deletion | CDS_variant | 2 | B65,B69 |
Chr1:76372457 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | A19,C24 |
Chr1:76372457 |
C |
CA |
1bp_insertion | CDS_variant | 2 | A19,C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797873.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 102-122 aa
PF13516
LRR_6 123-135 aa
PF00560
LRR_1 124-145 aa
PF13516
LRR_6 149-160 aa
PF00560
LRR_1 149-170 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797873.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.2e-19 | 66.9 | Leucine Rich Repeat |
XP_057797873.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 102 | 122 | 1.2e-19 | 66.9 | Leucine Rich Repeat |
XP_057797873.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 123 | 135 | 1.8e-08 | 34.5 | Leucine Rich repeat |
XP_057797873.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 124 | 145 | 1.2e-19 | 66.9 | Leucine Rich Repeat |
XP_057797873.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 149 | 160 | 1.8e-08 | 34.5 | Leucine Rich repeat |
XP_057797873.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 149 | 170 | 1.2e-19 | 66.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。