Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006091`

染色体: Chr01 坐标: 76397126-76481394 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006091`
名称	SmilChr01G006091
描述	receptor-like protein 9DC3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	76397126 - 76481394 / `+`

ID 对照

NCBI Gene ID	`LOC131006325`
GeneID	`131006325`
locus_tag	`-`
NCBI Name	`LOC131006325`
原始查询	`SmilChr01G006091`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 9DC3
产物	receptor-like protein 9DC3
Arabidopsis	`AT1G71400` (RLP12) receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481] identity=37.9; qcov=0.963; evalue=2.78e-142; confidence=medium
Rice	`Os12g0211500` - identity=36.3; qcov=0.94; evalue=8.49e-120; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131006325

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789518.1`
2	Nucleus	细胞核	0.00000	`XP_057789518.1`
3	Chromosome	染色体	0.00000	`XP_057789518.1`
4	Centromere	着丝粒	0.00000	`XP_057789518.1`
5	Chromatin	染色质	0.00000	`XP_057789518.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:76399581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr1:76399625`	`TAA`	`T`	2bp_deletion	frameshift_variant	2	A23,B103
`Chr1:76399625`	`TAA`	`T`	2bp_deletion	CDS_variant	2	A23,B103
`Chr1:76399631`	`C`	`CTA`	2bp_insertion	stop_gained,frameshift_variant	2	A23,B103
`Chr1:76399631`	`C`	`CTA`	2bp_insertion	CDS_variant	2	A23,B103
`Chr1:76399643`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A23,B103
`Chr1:76399643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B103
`Chr1:76399648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B103
`Chr1:76399734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B45
`Chr1:76399745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:76399753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:76399766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B60,C53,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789518.1

748 aa

374

748

LRR_1

LRR_8

LRR_1

LRR_14

LRR_1

LRR_8

LRR_6

LRR_1

LRR_8

LRR_1

PF00560 LRR_1 16-36 aa PF13855 LRR_8 39-78 aa PF00560 LRR_1 43-64 aa PF00560 LRR_1 67-88 aa PF00560 LRR_1 142-163 aa PF23598 LRR_14 159-268 aa PF00560 LRR_1 166-188 aa PF13855 LRR_8 166-221 aa PF13516 LRR_6 189-202 aa PF00560 LRR_1 191-211 aa PF00560 LRR_1 238-257 aa PF00560 LRR_1 262-284 aa PF00560 LRR_1 286-308 aa PF00560 LRR_1 310-332 aa PF00560 LRR_1 334-356 aa PF00560 LRR_1 359-380 aa PF00560 LRR_1 407-429 aa PF13855 LRR_8 407-466 aa PF00560 LRR_1 548-568 aa PF00560 LRR_1 570-591 aa PF00560 LRR_1 595-616 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	16	36	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF13855`	LRR_8	Repeat	39	78	1.1e-52	176.3	Leucine rich repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	43	64	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	67	88	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	142	163	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF23598`	LRR_14	Repeat	159	268	8.7e-42	143.8	Leucine-rich repeat region
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	166	188	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF13855`	LRR_8	Repeat	166	221	1.1e-52	176.3	Leucine rich repeat
`XP_057789518.1`	Pfam	`PF13516`	LRR_6	Repeat	189	202	2e-11	43.8	Leucine Rich repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	191	211	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	238	257	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	262	284	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	286	308	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	310	332	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	334	356	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	359	380	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	407	429	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF13855`	LRR_8	Repeat	407	466	1.1e-52	176.3	Leucine rich repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	548	568	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	570	591	3.7e-63	196.4	Leucine Rich Repeat
`XP_057789518.1`	Pfam	`PF00560`	LRR_1	Repeat	595	616	3.7e-63	196.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933535.1
ATAGTTTCAAGTTTAAGAAACTCATACAACTCGAACCAACCTTCAACACATCTTTTCCGATCAACTTCTTCTCTCAAGTGTGGAGATCCTATTACGAATCACAGTTCCCCCAACTCAAAGAAGAGAGAGATATTGCACCACAAATCAAACATCTCAGCTTCAAAAGAGTGGAACCTCGTTTTGCACGTGGATAGGAGTTACTTGTGATTCTCCTAGTAGCAGGGTGACTAAATTAGATCTCTCTTATATGTATCTCGAAG...

CDS

1 records

下载 CDS FASTA

LOC131006325
ATGTATCTCGAAGGCAGCTTCCCACAGGAAATTGAAAATCTTTCTTCTCTTGTTAATCTCGATTTGAGTTGGAACTCTTTTCATGGTCGGCTACCAAAGGACATTTGCATGCACAATAACCTTCAAAGACTCAAACGACTTAACCTATCGAGGAACGAAATGGAAGGAGATATACCGTCAAGTATGTACCAATGTCCACAACTTGAGAGTATTGACTTGTCAGGCAACAACTTTGGTGGACATGTGCCTGCACAAATTTG...

Protein

1 records

下载 Protein FASTA

XP_057789518.1
MYLEGSFPQEIENLSSLVNLDLSWNSFHGRLPKDICMHNNLQRLKRLNLSRNEMEGDIPSSMYQCPQLESIDLSGNNFGGHVPAQIWNITLLKVLDLGLNNLIGRLPKDICSHNNLQRLKLLSMWANELEGDIPLSLGQCTQLENIDLSWNNFGGNVPREIGNITQLKELHLDGNNLKGDIPKEIGYLNYLEVLDLSSNNLSGRLPRQLWNVTTLRKLYIGNISLTGGIPKEIVYLNNLEILDMSGNNLSGPFPRQILNI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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