当前解析结果
SmilChr01G006094| 统一新 Gene ID | SmilChr01G006094 |
|---|---|
| 名称 | SmilChr01G006094 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76417619 - 76419277 / + |
| NCBI Gene ID | LOC131006333 |
|---|---|
| GeneID | 131006333 |
| locus_tag | - |
| NCBI Name | LOC131006333 |
| 原始查询 | SmilChr01G006094 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT2G32660 (RLP22)receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826] identity=45.1; qcov=0.97; evalue=6.58e-50; confidence=medium |
| Rice | Os12g0221700- identity=49.1; qcov=0.952; evalue=1.44e-60; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789527.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789527.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789527.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789527.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76418144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C9 |
Chr1:76418182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:76418213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B23 |
Chr1:76418415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B23,D6 |
Chr1:76418656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr1:76418683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr1:76418766 |
ATG |
* |
2bp_deletion | CDS_variant | 4 | B2,C13,C4,D9 |
Chr1:76418770 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B120 |
Chr1:76418770 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B120 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789527.1PF00560
LRR_1 33-49 aa
PF00560
LRR_1 100-120 aa
PF13516
LRR_6 121-133 aa
PF00560
LRR_1 122-143 aa
PF13516
LRR_6 147-158 aa
PF00560
LRR_1 147-168 aa
PF00560
LRR_1 171-188 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789527.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 49 | 1e-20 | 70.1 | Leucine Rich Repeat |
XP_057789527.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 120 | 1e-20 | 70.1 | Leucine Rich Repeat |
XP_057789527.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 121 | 133 | 2.7e-09 | 37.1 | Leucine Rich repeat |
XP_057789527.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 122 | 143 | 1e-20 | 70.1 | Leucine Rich Repeat |
XP_057789527.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 147 | 158 | 2.7e-09 | 37.1 | Leucine Rich repeat |
XP_057789527.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 168 | 1e-20 | 70.1 | Leucine Rich Repeat |
XP_057789527.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 188 | 1e-20 | 70.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。