当前解析结果
SmilChr01G006098| 统一新 Gene ID | SmilChr01G006098 |
|---|---|
| 名称 | SmilChr01G006098 |
| 描述 | putative receptor like protein 25 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76458380 - 76459888 / + |
| NCBI Gene ID | LOC131006330 |
|---|---|
| GeneID | 131006330 |
| locus_tag | - |
| NCBI Name | LOC131006330 |
| 原始查询 | SmilChr01G006098 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor like protein 25 |
| 产物 | putative receptor like protein 25 |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=39.1; qcov=0.99; evalue=3.45e-58; confidence=medium |
| Rice | Os12g0221700- identity=41.1; qcov=0.869; evalue=1.07e-58; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789524.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789524.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789524.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789524.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789524.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76458884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B10,C46 |
Chr1:76458916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C46 |
Chr1:76459012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,B41,C52 |
Chr1:76459049 |
AAT |
A |
2bp_deletion | frameshift_variant | 1 | B43 |
Chr1:76459049 |
AAT |
A |
2bp_deletion | CDS_variant | 1 | B43 |
Chr1:76459058 |
TAG |
T |
2bp_deletion | frameshift_variant | 29 | A10,A19,A20,A6,B120,B122,B135,B137,B15,B28,B36,B4,B51,B52,B61,B62,B64,B8,B85,B90,B92,C20,C24,C34,C55,C64,C66,C81,D5 |
Chr1:76459065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:76459076 |
TC |
T |
1bp_deletion | frameshift_variant | 5 | A13,B114,B38,B39,C2 |
Chr1:76459076 |
TC |
T |
1bp_deletion | CDS_variant | 5 | A13,B114,B38,B39,C2 |
Chr1:76459088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:76459134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B66,B80,C76 |
Chr1:76459172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789524.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 103-123 aa
PF13516
LRR_6 124-136 aa
PF00560
LRR_1 125-146 aa
PF00560
LRR_1 150-171 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789524.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.5e-20 | 69.5 | Leucine Rich Repeat |
XP_057789524.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 103 | 123 | 1.5e-20 | 69.5 | Leucine Rich Repeat |
XP_057789524.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 124 | 136 | 2.4e-09 | 37.3 | Leucine Rich repeat |
XP_057789524.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 125 | 146 | 1.5e-20 | 69.5 | Leucine Rich Repeat |
XP_057789524.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 171 | 1.5e-20 | 69.5 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。