当前解析结果
SmilChr01G006100| 统一新 Gene ID | SmilChr01G006100 |
|---|---|
| 名称 | SmilChr01G006100 |
| 描述 | ABC transporter C family member 12-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76486045 - 76487897 / + |
| NCBI Gene ID | LOC131006335 |
|---|---|
| GeneID | 131006335 |
| locus_tag | - |
| NCBI Name | LOC131006335 |
| 原始查询 | SmilChr01G006100 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 12-like |
| 产物 | ABC transporter C family member 12-like |
| Arabidopsis | AT1G30410 (ABCC12)multidrug resistance-associated protein 13 [Source:NCBI gene (formerly Entrezgene);Acc:839921] identity=76.9; qcov=0.978; evalue=2.84e-92; confidence=high |
| Rice | Os04g0620000 (MRP1)- identity=75.3; qcov=1; evalue=5.18e-91; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0042626 (ATPase-coupled transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006335 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789529.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057789529.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789529.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789529.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789529.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76486886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B129,C80 |
Chr1:76486896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr1:76486934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr1:76486949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B80,C41,C60 |
Chr1:76487133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B8,B93 |
Chr1:76487134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:76487273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:76487288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:76487315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr1:76487369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:76487378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:76487432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789529.1PF00005
ABC_tran 12-102 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789529.1 |
Pfam | PF00005 |
ABC_tran | Domain | 12 | 102 | 2.1e-07 | 32.3 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。