Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006105`

染色体: Chr01 坐标: 76549681-76615946 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006105`
名称	SmilChr01G006105
描述	LRR receptor-like serine/threonine-protein kinase EFR
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	76549681 - 76615946 / `+`

ID 对照

NCBI Gene ID	`LOC131013987`
GeneID	`131013987`
locus_tag	`-`
NCBI Name	`LOC131013987`
原始查询	`SmilChr01G006105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase EFR
产物	LRR receptor-like serine/threonine-protein kinase EFR
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=36.4; qcov=0.882; evalue=8.57e-49; confidence=medium
Rice	`Os01g0694100` (LRR-RLK) - identity=36.8; qcov=0.935; evalue=3.71e-54; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131013987

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057797910.1`
2	Vacuole	液泡	0.20000	`XP_057797910.1`
3	Nucleus	细胞核	0.00000	`XP_057797910.1`
4	Chromosome	染色体	0.00000	`XP_057797910.1`
5	Centromere	着丝粒	0.00000	`XP_057797910.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:76549771`	`T`	`TC`	1bp_insertion	frameshift_variant	2	C39,C52
`Chr1:76549771`	`T`	`TC`	1bp_insertion	CDS_variant	2	C39,C52
`Chr1:76549774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:76549781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B17,B50,C56,C61
`Chr1:76549812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,C20,C29
`Chr1:76549839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:76549866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr1:76549873`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B124
`Chr1:76549873`	`TC`	`T`	1bp_deletion	CDS_variant	1	B124
`Chr1:76549878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B79,C17,C37,D11
`Chr1:76549890`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B13,B64,B8
`Chr1:76549890`	`TC`	`T`	1bp_deletion	CDS_variant	3	B13,B64,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797910.1

355 aa

178

355

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

LRR_6

LRR_1

PF08263 LRRNT_2 48-87 aa PF00560 LRR_1 116-136 aa PF13855 LRR_8 139-178 aa PF00560 LRR_1 143-165 aa PF00560 LRR_1 167-189 aa PF13516 LRR_6 190-202 aa PF00560 LRR_1 192-212 aa PF00560 LRR_1 266-287 aa PF00560 LRR_1 294-315 aa PF13516 LRR_6 315-330 aa PF00560 LRR_1 317-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797910.1`	Pfam	`PF08263`	LRRNT_2	Family	48	87	2.1e-10	41.4	Leucine rich repeat N-terminal domain
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	116	136	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF13855`	LRR_8	Repeat	139	178	1.2e-20	73.8	Leucine rich repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	143	165	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	167	189	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF13516`	LRR_6	Repeat	190	202	2e-06	28.1	Leucine Rich repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	192	212	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	266	287	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	294	315	7.4e-30	97.3	Leucine Rich Repeat
`XP_057797910.1`	Pfam	`PF13516`	LRR_6	Repeat	315	330	2e-06	28.1	Leucine Rich repeat
`XP_057797910.1`	Pfam	`PF00560`	LRR_1	Repeat	317	338	7.4e-30	97.3	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941927.1
CTGTTTTAGATTTGAATATAAATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATGCATTTTCCCCATTTTCCCTTCTTTCGCTTCTCTTATTGTTTTCATGTCTTAGCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTAAAATCCCACATCACTTCAGATCCTCACAATATTTTGAAAAATAATTGGAGCAGTGGAACCTCGTTTTGCAC...

CDS

1 records

下载 CDS FASTA

LOC131013987
ATGGCATTTGTAGGCTTCTTGTTTTCTCACACAATTAGCACTCACAATATGGATGCATTTTCCCCATTTTCCCTTCTTTCGCTTCTCTTATTGTTTTCATGTCTTAGCCTCTCTGCTGCACACAACATAACTCAAATCAAAAGTGATGAATATATACTTCTTGCCTTAAAATCCCACATCACTTCAGATCCTCACAATATTTTGAAAAATAATTGGAGCAGTGGAACCTCGTTTTGCACGTGGATAGGAGTTACTTGTGA...

Protein

1 records

下载 Protein FASTA

XP_057797910.1
MAFVGFLFSHTISTHNMDAFSPFSLLSLLLLFSCLSLSAAHNITQIKSDEYILLALKSHITSDPHNILKNNWSSGTSFCTWIGVTCDSRRSRMTELDISAMGLEGSIPQEIGNLSSLAYLDMSGNSFHGRLPKDICMHNNLQRLKRLNLSRNKMEGDIPSSLYQCPQLESIRLSDNNFGGLVPAQIWNMTLLKELDLSSNNLRGRLPKDICSHNNLQRLKLLSLWANKLEGDIPLSLGQCTQLEMIYLLDNNFGGNVPRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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