当前解析结果
SmilChr01G006108| 统一新 Gene ID | SmilChr01G006108 |
|---|---|
| 名称 | SmilChr01G006108 |
| 描述 | receptor-like protein 19 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76624924 - 76625847 / + |
| NCBI Gene ID | LOC131013996 |
|---|---|
| GeneID | 131013996 |
| locus_tag | - |
| NCBI Name | LOC131013996 |
| 原始查询 | SmilChr01G006108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 19 |
| 产物 | receptor-like protein 19 |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=41; qcov=0.906; evalue=3.32e-57; confidence=medium |
| Rice | Os12g0221700- identity=41.8; qcov=0.873; evalue=1.25e-57; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013996 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797918.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797918.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797918.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797918.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797918.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76624965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:76625093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B133,B21 |
Chr1:76625121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C63 |
Chr1:76625123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C78 |
Chr1:76625130 |
AC |
A |
1bp_deletion | frameshift_variant | 91 | A14,A16,A18,A2,A23,A4,A5,A8,A9,B10,B101,B102,B103,B105,B107,B109,B111,B115,B118,B124,B125,B128,B13,B131,B137,B140,B15,B25,B32,B41,B44,B53,B56,B59,B6,B64,B65,B66,B67,B69,B71,B73,B77,B78,B79,B81,B84,B88,B9,B90,B91,B92,B94,B96,C11,C12,C13,C15,C16,C19,C20,C21,C23,C24,C27,C29,C3,C30,C33,C35,C36,C37,C39,C40,C43,C45,C47,C50,C51,C55,C56,C59,C61,C62,C67,C69,C7,C73,C9,D2,D5 |
Chr1:76625147 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B14,C63 |
Chr1:76625147 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B14,C63 |
Chr1:76625158 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B14,C63 |
Chr1:76625158 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B14,C63 |
Chr1:76625196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B87 |
Chr1:76625202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B87 |
Chr1:76625208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797918.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 103-123 aa
PF13516
LRR_6 124-136 aa
PF00560
LRR_1 125-146 aa
PF00560
LRR_1 150-171 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797918.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 8.8e-20 | 67.3 | Leucine Rich Repeat |
XP_057797918.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 103 | 123 | 8.8e-20 | 67.3 | Leucine Rich Repeat |
XP_057797918.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 124 | 136 | 5.3e-07 | 29.9 | Leucine Rich repeat |
XP_057797918.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 125 | 146 | 8.8e-20 | 67.3 | Leucine Rich Repeat |
XP_057797918.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 171 | 8.8e-20 | 67.3 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。