当前解析结果
SmilChr01G006111| 统一新 Gene ID | SmilChr01G006111 |
|---|---|
| 名称 | SmilChr01G006111 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76650599 - 76651828 / + |
| NCBI Gene ID | LOC131006332 |
|---|---|
| GeneID | 131006332 |
| locus_tag | - |
| NCBI Name | LOC131006332 |
| 原始查询 | SmilChr01G006111 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT5G40170 (RLP54)receptor like protein 54 [Source:NCBI gene (formerly Entrezgene);Acc:834015] identity=41.2; qcov=1.02; evalue=2.6e-52; confidence=medium |
| Rice | Os01g0162800- identity=45.2; qcov=1.04; evalue=4.8e-54; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006332 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789526.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789526.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789526.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789526.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76650775 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C52 |
Chr1:76650775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr1:76650842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,C11 |
Chr1:76650864 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B111,C7 |
Chr1:76650864 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B111,C7 |
Chr1:76650953 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B71,C62 |
Chr1:76650953 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B71,C62 |
Chr1:76650969 |
AGC |
* |
2bp_deletion | CDS_variant | 2 | B71,C62 |
Chr1:76651011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C7 |
Chr1:76651035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B42,B43,C15 |
Chr1:76651056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C15 |
Chr1:76651070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789526.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 96-116 aa
PF13516
LRR_6 117-128 aa
PF00560
LRR_1 118-139 aa
PF13516
LRR_6 143-154 aa
PF00560
LRR_1 143-164 aa
PF00560
LRR_1 167-184 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789526.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.6e-21 | 72.4 | Leucine Rich Repeat |
XP_057789526.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 116 | 1.6e-21 | 72.4 | Leucine Rich Repeat |
XP_057789526.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 117 | 128 | 1.6e-09 | 37.8 | Leucine Rich repeat |
XP_057789526.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 139 | 1.6e-21 | 72.4 | Leucine Rich Repeat |
XP_057789526.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 143 | 154 | 1.6e-09 | 37.8 | Leucine Rich repeat |
XP_057789526.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 143 | 164 | 1.6e-21 | 72.4 | Leucine Rich Repeat |
XP_057789526.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 184 | 1.6e-21 | 72.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。