当前解析结果
SmilChr01G006118| 统一新 Gene ID | SmilChr01G006118 |
|---|---|
| 名称 | SmilChr01G006118 |
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76706003 - 76715706 / + |
| NCBI Gene ID | LOC131014026 |
|---|---|
| GeneID | 131014026 |
| locus_tag | - |
| NCBI Name | LOC131014026 |
| 原始查询 | SmilChr01G006118 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| 产物 | LRR receptor-like serine/threonine-protein kinase RGI5 |
| Arabidopsis | AT4G20140 (GSO1)Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=38; qcov=0.677; evalue=6.18e-36; confidence=medium |
| Rice | Os06g0585982- identity=32.4; qcov=0.803; evalue=5.39e-32; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014026 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797942.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797942.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057797942.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797942.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797942.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76706038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,C2,C42 |
Chr1:76706158 |
T |
TGA |
2bp_insertion | frameshift_variant | 6 | B18,B30,B5,B50,B95,C68 |
Chr1:76706181 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | B82,C2,C75 |
Chr1:76706181 |
GT |
G |
1bp_deletion | CDS_variant | 3 | B82,C2,C75 |
Chr1:76706183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,C2,C75 |
Chr1:76706189 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B82,C2,C75 |
Chr1:76706189 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B82,C2,C75 |
Chr1:76706209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B82,C2,C75 |
Chr1:76706215 |
T |
TG |
1bp_insertion | frameshift_variant | 10 | A24,B122,B137,B2,B35,C5,C54,C57,C82,D4 |
Chr1:76708033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr1:76708043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:76708093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797942.1PF13855
LRR_8 116-154 aa
PF12799
LRR_4 119-153 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 144-165 aa
PF00560
LRR_1 255-276 aa
PF00560
LRR_1 279-299 aa
PF13855
LRR_8 279-338 aa
PF13516
LRR_6 302-316 aa
PF00560
LRR_1 303-322 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797942.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 116 | 154 | 2.2e-18 | 66.5 | Leucine rich repeat |
XP_057797942.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 119 | 153 | 6.9e-17 | 61.8 | Leucine Rich repeats (2 copies) |
XP_057797942.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 2.1e-19 | 66.2 | Leucine Rich Repeat |
XP_057797942.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 165 | 2.1e-19 | 66.2 | Leucine Rich Repeat |
XP_057797942.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 255 | 276 | 2.1e-19 | 66.2 | Leucine Rich Repeat |
XP_057797942.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 279 | 299 | 2.1e-19 | 66.2 | Leucine Rich Repeat |
XP_057797942.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 279 | 338 | 2.2e-18 | 66.5 | Leucine rich repeat |
XP_057797942.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 302 | 316 | 3.1e-05 | 24.4 | Leucine Rich repeat |
XP_057797942.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 303 | 322 | 2.1e-19 | 66.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。