当前解析结果
SmilChr01G006131| 统一新 Gene ID | SmilChr01G006131 |
|---|---|
| 名称 | SmilChr01G006131 |
| 描述 | 3-ketoacyl-CoA synthase 19-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76828639 - 76833459 / + |
| NCBI Gene ID | LOC131006367 |
|---|---|
| GeneID | 131006367 |
| locus_tag | - |
| NCBI Name | LOC131006367 |
| 原始查询 | SmilChr01G006131 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-ketoacyl-CoA synthase 19-like |
| 产物 | 3-ketoacyl-CoA synthase 19-like |
| Arabidopsis | AT5G04530 (KCS19)3-ketoacyl-CoA synthase 19 [Source:NCBI gene (formerly Entrezgene);Acc:830332] identity=60.6; qcov=0.948; evalue=0; confidence=high |
| Rice | Os10g0472900 (OSJNBb0094K03.7)- identity=52.9; qcov=0.989; evalue=1.41e-179; confidence=high |
| GO | GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006367 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057789538.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057789538.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789538.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789538.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789538.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76828791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:76828902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B56 |
Chr1:76828970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C77 |
Chr1:76829042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B52 |
Chr1:76829075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C69,C74 |
Chr1:76829109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,D6 |
Chr1:76829118 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B55,B83,C44 |
Chr1:76829118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B83,C44 |
Chr1:76829172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr1:76829194 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:76829249 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:76829261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789538.1PF08392
FAE1_CUT1_RppA 24-307 aa
PF08541
ACP_syn_III_C 330-413 aa
PF02797
Chal_sti_synt_C 335-407 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789538.1 |
Pfam | PF08392 |
FAE1_CUT1_RppA | Family | 24 | 307 | 2.2e-111 | 372.5 | FAE1/Type III polyketide synthase-like protein |
XP_057789538.1 |
Pfam | PF08541 |
ACP_syn_III_C | Domain | 330 | 413 | 9.8e-12 | 45.6 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
XP_057789538.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 335 | 407 | 4.2e-09 | 37.3 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。