当前解析结果
SmilChr01G006145| 统一新 Gene ID | SmilChr01G006145 |
|---|---|
| 名称 | SmilChr01G006145 |
| 描述 | probable leucine-rich repeat receptor-like protein kinase At5g63930 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76941736 - 76943877 / - |
| NCBI Gene ID | LOC131014090 |
|---|---|
| GeneID | 131014090 |
| locus_tag | - |
| NCBI Name | LOC131014090 |
| 原始查询 | SmilChr01G006145 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable leucine-rich repeat receptor-like protein kinase At5g63930 |
| 产物 | probable leucine-rich repeat receptor-like protein kinase At5g63930 |
| Arabidopsis | AT5G63930 (AT5G63930)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=40; qcov=0.919; evalue=4.84e-25; confidence=medium |
| Rice | Os01g0818700- identity=41.7; qcov=0.934; evalue=1.32e-22; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014090 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057797998.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057797998.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797998.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797998.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797998.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76941741 |
GT |
G |
1bp_deletion | frameshift_variant | 11 | A7,B1,B125,B14,B22,B40,C5,C79,C9,D11,D8 |
Chr1:76941762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C41 |
Chr1:76941783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B83,C27,C8 |
Chr1:76941786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B58,B64,B87,C63,C69 |
Chr1:76941855 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | B58,C35,C44 |
Chr1:76941855 |
T |
TG |
1bp_insertion | CDS_variant | 3 | B58,C35,C44 |
Chr1:76942782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:76942801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B16 |
Chr1:76942845 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797998.1PF23598
LRR_14 10-118 aa
PF00560
LRR_1 17-39 aa
PF13855
LRR_8 17-72 aa
PF00560
LRR_1 42-62 aa
PF00560
LRR_1 66-87 aa
PF00560
LRR_1 89-109 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797998.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 10 | 118 | 1e-13 | 51.5 | Leucine-rich repeat region |
XP_057797998.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 17 | 39 | 2.1e-15 | 54.3 | Leucine Rich Repeat |
XP_057797998.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 17 | 72 | 4e-11 | 43.2 | Leucine rich repeat |
XP_057797998.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 42 | 62 | 2.1e-15 | 54.3 | Leucine Rich Repeat |
XP_057797998.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 66 | 87 | 2.1e-15 | 54.3 | Leucine Rich Repeat |
XP_057797998.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 89 | 109 | 2.1e-15 | 54.3 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。