当前解析结果
SmilChr01G006159| 统一新 Gene ID | SmilChr01G006159 |
|---|---|
| 名称 | SmilChr01G006159 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 77003151 - 77004165 / - |
| NCBI Gene ID | LOC131014113 |
|---|---|
| GeneID | 131014113 |
| locus_tag | - |
| NCBI Name | LOC131014113 |
| 原始查询 | SmilChr01G006159 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT2G32660 (RLP22)receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826] identity=45.5; qcov=0.97; evalue=1.33e-52; confidence=high |
| Rice | Os12g0218500- identity=48.2; qcov=0.961; evalue=1.77e-61; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014113 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798000.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798000.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798000.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798000.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:77003554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B46 |
Chr1:77003602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B42,B73,D10 |
Chr1:77003654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr1:77003663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,B3,B35 |
Chr1:77003672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:77003673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr1:77003754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B124,B85,C7 |
Chr1:77003917 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | B115,B20,B22,C6,C79 |
Chr1:77003917 |
A |
AT |
1bp_insertion | CDS_variant | 5 | B115,B20,B22,C6,C79 |
Chr1:77003923 |
TA |
T |
1bp_deletion | frameshift_variant | 6 | B115,B20,B22,B57,C6,C79 |
Chr1:77003941 |
ATC |
A |
2bp_deletion | frameshift_variant | 49 | A10,A18,A19,A20,A24,A25,B110,B111,B115,B117,B125,B128,B132,B134,B135,B15,B20,B21,B22,B28,B37,B44,B49,B53,B57,B79,B84,B85,B90,C13,C17,C3,C33,C37,C39,C40,C41,C42,C47,C50,C52,C55,C56,C6,C65,C7,C79,C81,D4 |
Chr1:77003954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798000.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 105-125 aa
PF13516
LRR_6 126-138 aa
PF00560
LRR_1 127-148 aa
PF13516
LRR_6 152-163 aa
PF00560
LRR_1 152-173 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798000.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 8.1e-21 | 70.4 | Leucine Rich Repeat |
XP_057798000.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 105 | 125 | 8.1e-21 | 70.4 | Leucine Rich Repeat |
XP_057798000.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 126 | 138 | 2e-07 | 31.2 | Leucine Rich repeat |
XP_057798000.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 127 | 148 | 8.1e-21 | 70.4 | Leucine Rich Repeat |
XP_057798000.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 152 | 163 | 2e-07 | 31.2 | Leucine Rich repeat |
XP_057798000.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 152 | 173 | 8.1e-21 | 70.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。