当前解析结果
SmilChr01G006166| 统一新 Gene ID | SmilChr01G006166 |
|---|---|
| 名称 | SmilChr01G006166 |
| 描述 | receptor-like protein 35 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 77087665 - 77089217 / - |
| NCBI Gene ID | LOC131006377 |
|---|---|
| GeneID | 131006377 |
| locus_tag | - |
| NCBI Name | LOC131006377 |
| 原始查询 | SmilChr01G006166 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 35 |
| 产物 | receptor-like protein 35 |
| Arabidopsis | AT3G11010 (RLP34)receptor like protein 34 [Source:NCBI gene (formerly Entrezgene);Acc:820272] identity=51.1; qcov=0.941; evalue=2.28e-38; confidence=medium |
| Rice | Os05g0170300- identity=43.4; qcov=0.984; evalue=5.68e-37; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006377 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789542.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057789542.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057789542.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789542.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789542.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:77087806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr1:77087828 |
G |
GTC |
2bp_insertion | frameshift_variant | 2 | B132,B44 |
Chr1:77087828 |
G |
GTC |
2bp_insertion | CDS_variant | 2 | B132,B44 |
Chr1:77087829 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | B44 |
Chr1:77087829 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | B44 |
Chr1:77087835 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B44 |
Chr1:77087835 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B44 |
Chr1:77087836 |
G |
GTT |
2bp_insertion | frameshift_variant | 10 | A10,A20,A23,B52,B61,C13,C37,C47,C49,C50 |
Chr1:77087837 |
CCA |
C |
2bp_deletion | frameshift_variant | 12 | A10,A20,A23,B12,B52,B61,B7,C13,C37,C47,C49,C50 |
Chr1:77087877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B36 |
Chr1:77088259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D1 |
Chr1:77088281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B131,C18,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789542.1PF00560
LRR_1 17-38 aa
PF23598
LRR_14 19-146 aa
PF00560
LRR_1 66-88 aa
PF13855
LRR_8 66-125 aa
PF00560
LRR_1 90-112 aa
PF00560
LRR_1 114-136 aa
PF00560
LRR_1 138-160 aa
PF00560
LRR_1 162-184 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 17 | 38 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
XP_057789542.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 19 | 146 | 2.5e-23 | 83.1 | Leucine-rich repeat region |
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 66 | 88 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
XP_057789542.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 66 | 125 | 7.4e-15 | 55.2 | Leucine rich repeat |
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 90 | 112 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 114 | 136 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 138 | 160 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
XP_057789542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 162 | 184 | 2.3e-25 | 83.9 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。