当前解析结果
SmilChr01G006197| 统一新 Gene ID | SmilChr01G006197 |
|---|---|
| 名称 | SmilChr01G006197 |
| 描述 | uncharacterized SmilChr01G006197 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 77645546 - 77648105 / - |
| NCBI Gene ID | LOC131014237 |
|---|---|
| GeneID | 131014237 |
| locus_tag | - |
| NCBI Name | LOC131014237 |
| 原始查询 | SmilChr01G006197 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| 产物 | TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G19260 (AT1G19260)TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=45.8; qcov=1.11; evalue=0; confidence=high |
| Rice | Os02g0301400- identity=36.4; qcov=0.647; evalue=3.63e-89; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014237 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798119.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057798119.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798119.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798119.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798119.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:77645578 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B25,C8 |
Chr1:77645578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C8 |
Chr1:77645666 |
TCC |
T |
2bp_deletion | frameshift_variant | 2 | C87,D4 |
Chr1:77645666 |
TCC |
T |
2bp_deletion | CDS_variant | 2 | C87,D4 |
Chr1:77645676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D4 |
Chr1:77645679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D4 |
Chr1:77645685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D4 |
Chr1:77645690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C87,D4 |
Chr1:77645709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B94 |
Chr1:77645716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B94 |
Chr1:77645730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B94 |
Chr1:77645741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798119.1PF14291
DUF4371 125-215 aa
PF27073
FAM200-ZBED5_RNase-like 215-331 aa
PF14291
DUF4371 216-326 aa
PF05699
Dimer_Tnp_hAT 626-685 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798119.1 |
Pfam | PF14291 |
DUF4371 | Domain | 125 | 215 | 4.6e-88 | 295.5 | ZMYM1/FAM200, RNase-like domain |
XP_057798119.1 |
Pfam | PF27073 |
FAM200-ZBED5_RNase-like | Domain | 215 | 331 | 1.7e-12 | 48.0 | FAM200/ZBED5 RNase-like |
XP_057798119.1 |
Pfam | PF14291 |
DUF4371 | Domain | 216 | 326 | 4.6e-88 | 295.5 | ZMYM1/FAM200, RNase-like domain |
XP_057798119.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 626 | 685 | 4.3e-07 | 30.3 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。