Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000013`

染色体: Chr02 坐标: 101051-101737 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000013`
名称	SmilChr02G000013
描述	uncharacterized RING finger protein ECU07_0330-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	101051 - 101737 / `-`

ID 对照

NCBI Gene ID	`LOC131013205`
GeneID	`131013205`
locus_tag	`-`
NCBI Name	`LOC131013205`
原始查询	`SmilChr02G000013`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380]; symbol=AT1G80400; hit=AT1G80400; species=arabidopsis; confidence=weak
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380]; symbol=AT1G80400; hit=AT1G80400; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G80400` (AT1G80400) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844380] identity=49; qcov=0.224; evalue=8.63e-12; confidence=weak
Rice	`Os09g0323100` (OsHTAS) - identity=45.6; qcov=0.26; evalue=4.88e-11; confidence=weak
GO	GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131013205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797252.1`
2	Cytosol	细胞质基质	1.00000	`XP_057797252.1`
3	Cytoplasm	细胞质	0.80000	`XP_057797252.1`
4	Chromosome	染色体	0.00000	`XP_057797252.1`
5	Centromere	着丝粒	0.00000	`XP_057797252.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:101172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:101232`	`TC`	`*`	1bp_deletion	CDS_variant	4	B29,C38,C41,C8
`Chr2:101235`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B137,B54,C72
`Chr2:101235`	`TC`	`T`	1bp_deletion	CDS_variant	3	B137,B54,C72
`Chr2:101238`	`TCC`	`T`	2bp_deletion	frameshift_variant	3	B137,B54,C72
`Chr2:101238`	`TCC`	`T`	2bp_deletion	CDS_variant	3	B137,B54,C72
`Chr2:101258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B54,C72,D10
`Chr2:101276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B78,C37,C60,D9
`Chr2:101288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B19,B29,B9,C38
`Chr2:101301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C1,C22
`Chr2:101305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C27,D3
`Chr2:101395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,C63,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797252.1

219 aa

110

219

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 173-216 aa PF13639 zf-RING_2 174-216 aa PF17123 zf-RING_11 175-202 aa PF00097 zf-C3HC4 175-215 aa PF13923 zf-C3HC4_2 175-215 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797252.1`	Pfam	`PF12678`	zf-rbx1	Domain	173	216	6.5e-08	33.4	RING-H2 zinc finger domain
`XP_057797252.1`	Pfam	`PF13639`	zf-RING_2	Domain	174	216	1.5e-13	51.5	Ring finger domain
`XP_057797252.1`	Pfam	`PF17123`	zf-RING_11	Domain	175	202	3e-09	37.1	RING-like zinc finger
`XP_057797252.1`	Pfam	`PF00097`	zf-C3HC4	Domain	175	215	3.5e-05	24.3	Zinc finger, C3HC4 type (RING finger)
`XP_057797252.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	175	215	5.9e-07	29.9	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941269.1
ATGGATTGCTACTACCATCCATTCACCGCCTTCAACCTCATCCGAGGGGATTTCCGTCCCCCAATTTTGCCCCAACTCAGAATCCAATTCCACCTTTTCTTCGAAATCAAATACAACAATTACTTGCTAGACCACGACTGCACACTACAAGGGTTTCCCGGCACCTTCCCCACCACCCAAACCTACGCCACCGCCACCGTGGTCATCGACGGAGAAACCCTCTCGTTTGCGGCCGTAAAGGCGGCCGTCGGGAGGGCCAT...

CDS

1 records

下载 CDS FASTA

LOC131013205
ATGGATTGCTACTACCATCCATTCACCGCCTTCAACCTCATCCGAGGGGATTTCCGTCCCCCAATTTTGCCCCAACTCAGAATCCAATTCCACCTTTTCTTCGAAATCAAATACAACAATTACTTGCTAGACCACGACTGCACACTACAAGGGTTTCCCGGCACCTTCCCCACCACCCAAACCTACGCCACCGCCACCGTGGTCATCGACGGAGAAACCCTCTCGTTTGCGGCCGTAAAGGCGGCCGTCGGGAGGGCCAT...

Protein

1 records

下载 Protein FASTA

XP_057797252.1
MDCYYHPFTAFNLIRGDFRPPILPQLRIQFHLFFEIKYNNYLLDHDCTLQGFPGTFPTTQTYATATVVIDGETLSFAAVKAAVGRAIRNHVPTVGRRGEDLIVFAFEQARVRLPAHRTLSGSCDLHLTFDVRVEHRHVFFVEDEDPLLVPAAEEPSFASLLEKYEEEEEEEERCCCICLEKLGDGGGASKMPCSHVYHGGCINKWLKKSPSCPLCRYEI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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