当前解析结果
SmilChr02G000029| 统一新 Gene ID | SmilChr02G000029 |
|---|---|
| 名称 | SmilChr02G000029 |
| 描述 | wall-associated receptor kinase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 305953 - 343096 / + |
| NCBI Gene ID | LOC131012461 |
|---|---|
| GeneID | 131012461 |
| locus_tag | - |
| NCBI Name | LOC131012461 |
| 原始查询 | SmilChr02G000029 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase 2-like |
| 产物 | wall-associated receptor kinase 2-like |
| Arabidopsis | AT1G69730 (AT1G69730)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=41; qcov=0.794; evalue=1.84e-155; confidence=medium |
| Rice | Os04g0598900 (OsWAK50)- identity=41.9; qcov=0.768; evalue=3.9e-155; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF12947 (EGF_3); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012461 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796398.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796398.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796398.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796398.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796398.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:306052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr2:306063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C41,C76 |
Chr2:306131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B55,B78,B83 |
Chr2:306163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:306209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C54,C57 |
Chr2:306340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:306406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,A3 |
Chr2:306446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,A3 |
Chr2:306493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B130,B27,B73 |
Chr2:306531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B41,B45,C79 |
Chr2:306631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B53 |
Chr2:315748 |
AG |
A |
1bp_deletion | frameshift_variant | 9 | B13,B16,B45,B85,B90,B91,B92,D6,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796398.1PF13947
GUB_WAK_bind 218-261 aa
PF07645
EGF_CA 500-531 aa
PF12947
EGF_3 506-535 aa
PF00069
Pkinase 623-888 aa
PF07714
PK_Tyr_Ser-Thr 626-891 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796398.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 218 | 261 | 2.5e-08 | 34.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057796398.1 |
Pfam | PF07645 |
EGF_CA | Domain | 500 | 531 | 2.6e-07 | 31.5 | Calcium-binding EGF domain |
XP_057796398.1 |
Pfam | PF12947 |
EGF_3 | Domain | 506 | 535 | 2.7e-08 | 34.6 | EGF domain |
XP_057796398.1 |
Pfam | PF00069 |
Pkinase | Domain | 623 | 888 | 5.3e-49 | 167.7 | Protein kinase domain |
XP_057796398.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 626 | 891 | 1.8e-47 | 162.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。