当前解析结果
SmilChr02G000041| 统一新 Gene ID | SmilChr02G000041 |
|---|---|
| 名称 | SmilChr02G000041 |
| 描述 | uncharacterized SmilChr02G000041 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 540417 - 541118 / - |
| NCBI Gene ID | LOC131013648 |
|---|---|
| GeneID | 131013648 |
| locus_tag | - |
| NCBI Name | LOC131013648 |
| 原始查询 | SmilChr02G000041 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835590]; symbol=AT5G54990; hit=AT5G54990; species=arabidopsis; confidence=weak |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835590]; symbol=AT5G54990; hit=AT5G54990; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G54990 (AT5G54990)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835590] identity=47.4; qcov=0.245; evalue=2.32e-10; confidence=weak |
| Rice | Os12g0140700- identity=31.7; qcov=0.515; evalue=3.35e-09; confidence=low |
| GO | GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013648 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057797760.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057797760.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797760.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797760.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797760.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:540442 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | C2,C32,C68 |
Chr2:540442 |
GT |
G |
1bp_deletion | CDS_variant | 3 | C2,C32,C68 |
Chr2:540463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr2:540476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:540484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:540501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr2:540550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:540617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr2:540625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C83,D11,D2 |
Chr2:540631 |
A |
ATG |
2bp_insertion | frameshift_variant | 16 | A9,B122,B19,B36,B45,B63,B74,C14,C17,C41,C55,C77,C8,C86,D10,D11 |
Chr2:540637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr2:540651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,A4,B5,C46,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797760.1PF13639
zf-RING_2 168-215 aa
PF00097
zf-C3HC4 169-214 aa
PF12678
zf-rbx1 188-215 aa
PF12861
zf-ANAPC11 191-219 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797760.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 168 | 215 | 7.8e-13 | 49.2 | Ring finger domain |
XP_057797760.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 169 | 214 | 8.8e-07 | 29.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057797760.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 188 | 215 | 5.7e-08 | 33.6 | RING-H2 zinc finger domain |
XP_057797760.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 191 | 219 | 4.5e-06 | 27.3 | Anaphase-promoting complex subunit 11 RING-H2 finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。