当前解析结果
SmilChr02G000044| 统一新 Gene ID | SmilChr02G000044 |
|---|---|
| 名称 | SmilChr02G000044 |
| 描述 | uncharacterized SmilChr02G000044 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 593910 - 596743 / - |
| NCBI Gene ID | LOC131012495 |
|---|---|
| GeneID | 131012495 |
| locus_tag | - |
| NCBI Name | LOC131012495 |
| 原始查询 | SmilChr02G000044 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high |
| 产物 | TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G05270 (AT1G05270)TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=47.4; qcov=0.75; evalue=4.36e-63; confidence=high |
| Rice | Os05g0499500- identity=48.1; qcov=0.78; evalue=1.63e-62; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012495 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057796465.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057796465.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057796465.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796465.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796465.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:594411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B37 |
Chr2:594625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B6,B64,C12,C24 |
Chr2:594642 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B1,C74,D10 |
Chr2:594642 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B1,C74,D10 |
Chr2:594704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:594827 |
G |
GC |
1bp_insertion | frameshift_variant | 9 | B10,B76,B87,B97,C13,C43,C46,C47,C52 |
Chr2:594832 |
A |
ATT |
2bp_insertion | frameshift_variant | 11 | B10,B21,B25,B76,B87,B97,C13,C43,C46,C47,C52 |
Chr2:594835 |
G |
GC |
1bp_insertion | frameshift_variant | 11 | B10,B21,B25,B76,B87,B97,C13,C43,C46,C47,C52 |
Chr2:594838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B90,C58,C74 |
Chr2:594848 |
T |
TTA |
2bp_insertion | frameshift_variant | 11 | B10,B21,B25,B76,B87,B97,C13,C43,C46,C47,C52 |
Chr2:594881 |
C |
CG |
1bp_insertion | frameshift_variant | 2 | B42,C45 |
Chr2:594881 |
C |
CG |
1bp_insertion | CDS_variant | 2 | B42,C45 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。