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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000046

染色体: Chr02 坐标: 634943-638254 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000046
名称SmilChr02G000046
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向634943 - 638254 / +

ID 对照

NCBI Gene IDLOC131012466
GeneID131012466
locus_tag-
NCBI NameLOC131012466
原始查询SmilChr02G000046

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=35.1; qcov=0.807; evalue=9.94e-130; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.2; qcov=0.906; evalue=1.56e-103; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012466

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796405.1
2 Chloroplast 叶绿体 0.20000 XP_057796405.1
3 Nucleus 细胞核 0.00000 XP_057796405.1
4 Chromosome 染色体 0.00000 XP_057796405.1
5 Centromere 着丝粒 0.00000 XP_057796405.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:635035 AT A 1bp_deletion frameshift_variant 1 C36
Chr2:635035 AT A 1bp_deletion CDS_variant 1 C36
Chr2:635061 C T EMS_canonical_SNV CDS_variant 5 B110,B126,B132,B67,C1
Chr2:635146 C T EMS_canonical_SNV CDS_variant 3 A18,B104,C15
Chr2:635147 A ATG 2bp_insertion frameshift_variant 5 A8,B122,B78,C9,D6
Chr2:635147 A ATG 2bp_insertion CDS_variant 5 A8,B122,B78,C9,D6
Chr2:635161 C T EMS_canonical_SNV CDS_variant 2 B104,C15
Chr2:635197 GA G 1bp_deletion frameshift_variant 2 B36,C3
Chr2:635197 GA G 1bp_deletion CDS_variant 2 B36,C3
Chr2:635215 C T EMS_canonical_SNV CDS_variant 5 B115,B15,B79,C20,C34
Chr2:635364 G A EMS_canonical_SNV CDS_variant 3 B23,C24,C27
Chr2:635536 C T EMS_canonical_SNV CDS_variant 4 A23,B114,B13,B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796405.1
693 aa
N
1
346
693
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
C
PF13041 PPR_2 75-124 aa PF13812 PPR_3 140-191 aa PF12854 PPR_1 141-171 aa PF13041 PPR_2 145-195 aa PF01535 PPR 148-172 aa PF12854 PPR_1 179-206 aa PF13041 PPR_2 181-232 aa PF01535 PPR 184-210 aa PF17177 PPR_long 186-332 aa PF12854 PPR_1 216-244 aa PF13812 PPR_3 216-263 aa PF13041 PPR_2 218-267 aa PF23276 TPR_24 221-312 aa PF01535 PPR 222-251 aa PF12854 PPR_1 249-281 aa PF13041 PPR_2 253-297 aa PF01535 PPR 256-282 aa PF13812 PPR_3 278-335 aa PF12854 PPR_1 286-317 aa PF13041 PPR_2 288-336 aa PF01535 PPR 291-319 aa PF12854 PPR_1 321-348 aa PF13041 PPR_2 323-371 aa PF01535 PPR 326-356 aa PF13812 PPR_3 346-405 aa PF12854 PPR_1 355-380 aa PF13041 PPR_2 358-406 aa PF01535 PPR 361-390 aa PF13812 PPR_3 382-442 aa PF12854 PPR_1 390-415 aa PF13041 PPR_2 393-442 aa PF01535 PPR 396-425 aa PF13812 PPR_3 417-474 aa PF12854 PPR_1 425-453 aa PF13041 PPR_2 428-475 aa PF01535 PPR 431-453 aa PF13812 PPR_3 458-508 aa PF13041 PPR_2 463-511 aa PF01535 PPR 466-495 aa PF13812 PPR_3 487-543 aa PF12854 PPR_1 495-527 aa PF01535 PPR 502-531 aa PF23276 TPR_24 503-564 aa PF13041 PPR_2 509-547 aa PF12854 PPR_1 529-560 aa PF01535 PPR 536-566 aa PF13041 PPR_2 540-581 aa PF23276 TPR_24 556-650 aa PF13812 PPR_3 557-610 aa PF12854 PPR_1 564-597 aa PF01535 PPR 571-600 aa PF13041 PPR_2 574-617 aa PF13041 PPR_2 603-647 aa PF01535 PPR 606-636 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 75 124 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 140 191 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 141 171 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 145 195 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 148 172 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 179 206 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 181 232 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 184 210 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF17177 PPR_long Repeat 186 332 8.1e-26 91.4 Pentacotripeptide-repeat region of PRORP
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 216 244 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 216 263 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 218 267 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF23276 TPR_24 Repeat 221 312 1.1e-36 126.4 Pentatricopeptide repeat-containing protein
XP_057796405.1 Pfam PF01535 PPR Repeat 222 251 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 249 281 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 253 297 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 256 282 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 278 335 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 286 317 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 288 336 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 291 319 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 321 348 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 323 371 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 326 356 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 346 405 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 355 380 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 358 406 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 361 390 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 382 442 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 390 415 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 393 442 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 396 425 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 417 474 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 425 453 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 428 475 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 431 453 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 458 508 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 463 511 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 466 495 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 487 543 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 495 527 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF01535 PPR Repeat 502 531 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF23276 TPR_24 Repeat 503 564 1.1e-36 126.4 Pentatricopeptide repeat-containing protein
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 509 547 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 529 560 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF01535 PPR Repeat 536 566 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 540 581 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF23276 TPR_24 Repeat 556 650 1.1e-36 126.4 Pentatricopeptide repeat-containing protein
XP_057796405.1 Pfam PF13812 PPR_3 Repeat 557 610 2.2e-75 249.4 Pentatricopeptide repeat domain
XP_057796405.1 Pfam PF12854 PPR_1 Repeat 564 597 1.1e-153 499.3 PPR repeat
XP_057796405.1 Pfam PF01535 PPR Repeat 571 600 2.1e-107 344.9 PPR repeat
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 574 617 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF13041 PPR_2 Repeat 603 647 4.8e-186 603.6 PPR repeat family
XP_057796405.1 Pfam PF01535 PPR Repeat 606 636 2.1e-107 344.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009097333.1
CCCTATCTTTCCTTCTTCAGCTTTCACATCTGAAATTCTGCAAAATTATCCCAACAATCAGGTCGAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGCACTTCTCCTCCTATCCCAGATTCGATTTTGAATCTATACGTGAGCCCAACGATGCC...
XM_057940422.1
CCCTATCTTTCCTTCTTCAGCTTTCACATCTGAAATTCTGCAAAATTATCCCAACAATCAGGTCGAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGCACTTCTCCTCCTATCCCAGATTCGATTTTGAATCTATACGTGAGCCCAACGATGCC...

CDS

1 records

下载 CDS FASTA
LOC131012466
ATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGCACTTCTCCTCCTATCCCAGATTCGATTTTGAATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTATCCTTTTCTCAAAATTGCTGAGTGCTGT...

Protein

1 records

下载 Protein FASTA
XP_057796405.1
MFLGRILSNSSSKFSTFAIASPHYQSFLVPSFHFDNASCQMRHFSSYPRFDFESIREPNDAVALFRDMMRTEPLPSVILFSKLLSAVVKLKQYSAALHLFDKMLQREAPVNHYTLSIAIDCYCRLKRPDFGLAILGSFFKRGYEPDVVTFNTLIKGLLFVGRIPEAAKLLGKLSAYQLCEPDEYTYNTIINGLCKAGDILQAIDLLCSLEKGRGSCKPNVYAYNIVIDALCKDGKVDEALQLFSSLGDKGISPNVVTYNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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