当前解析结果
SmilChr02G000070| 统一新 Gene ID | SmilChr02G000070 |
|---|---|
| 名称 | SmilChr02G000070 |
| 描述 | protein STABILIZED1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 891547 - 894899 / + |
| NCBI Gene ID | LOC131012459 |
|---|---|
| GeneID | 131012459 |
| locus_tag | - |
| NCBI Name | LOC131012459 |
| 原始查询 | SmilChr02G000070 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STABILIZED1-like |
| 产物 | protein STABILIZED1-like |
| Arabidopsis | AT4G03430 (EMB2770)pre-mRNA splicing factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827925] identity=76.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os10g0498600 (Du1)- identity=78.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000244 (spliceosomal tri-snRNP complex assembly); GO:0000398 (mRNA splicing, via spliceosome); GO:0005515 (protein binding); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071013 (catalytic step 2 spliceosome); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:2000630 (positive regulation of miRNA metabolic process); GO:2000636 (positive regulation of primary miRNA processing) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05843 (Suf); PF06424 (PRP1_N); PF13181 (TPR_8); PF13428 (TPR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012459 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796394.1 |
| 2 | Nucleolus | 核仁 | 0.40000 | XP_057796394.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057796394.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796394.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796394.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:891800 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C15 |
Chr2:891800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:891832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr2:892041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:892138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C47 |
Chr2:892156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:892222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,A9,B35,B36 |
Chr2:892243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C47 |
Chr2:892252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,C47 |
Chr2:892306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,B95 |
Chr2:892480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:892576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796394.1PF06424
PRP1_N 98-263 aa
PF13428
TPR_14 384-427 aa
PF05843
Suf 418-572 aa
PF13181
TPR_8 785-812 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796394.1 |
Pfam | PF06424 |
PRP1_N | Domain | 98 | 263 | 9.1e-55 | 185.8 | PRP1 splicing factor, N-terminal |
XP_057796394.1 |
Pfam | PF13428 |
TPR_14 | Repeat | 384 | 427 | 3.8e-42 | 139.1 | Tetratricopeptide repeat |
XP_057796394.1 |
Pfam | PF05843 |
Suf | Repeat | 418 | 572 | 7.4e-20 | 71.7 | Suppressor of forked protein (Suf) |
XP_057796394.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 785 | 812 | 1.3e-08 | 35.0 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。