Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000071`

染色体: Chr02 坐标: 897628-899878 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000071`
名称	SmilChr02G000071
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	897628 - 899878 / `-`

ID 对照

NCBI Gene ID	`LOC131012467`
GeneID	`131012467`
locus_tag	`-`
NCBI Name	`LOC131012467`
原始查询	`SmilChr02G000071`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=36; qcov=0.933; evalue=5.03e-131; confidence=medium
Rice	`Os08g0107800` - identity=31; qcov=0.928; evalue=1.35e-89; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131012467

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057796406.1`
2	Chloroplast	叶绿体	0.20000	`XP_057796406.1`
3	Nucleus	细胞核	0.00000	`XP_057796406.1`
4	Chromosome	染色体	0.00000	`XP_057796406.1`
5	Centromere	着丝粒	0.00000	`XP_057796406.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:897944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr2:897984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,C26,C54
`Chr2:898027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C26,C54
`Chr2:898050`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C26,C54
`Chr2:898053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C26,C54
`Chr2:898078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B122,C39,C8,D7
`Chr2:898116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B122,B126,B23,D9
`Chr2:898148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B122,B23,C38,C76
`Chr2:898224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B21,B25,C1,D11
`Chr2:898265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr2:898304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,B20,C64
`Chr2:898306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B20,C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796406.1

611 aa

306

611

PPR_2

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PF13041 PPR_2 82-131 aa PF12854 PPR_1 148-177 aa PF13041 PPR_2 152-202 aa PF01535 PPR 155-178 aa PF12854 PPR_1 186-204 aa PF01535 PPR 192-218 aa PF13812 PPR_3 220-272 aa PF12854 PPR_1 223-251 aa PF13041 PPR_2 225-274 aa PF01535 PPR 229-258 aa PF12854 PPR_1 256-288 aa PF13041 PPR_2 260-309 aa PF01535 PPR 263-291 aa PF13812 PPR_3 285-342 aa PF12854 PPR_1 292-324 aa PF01535 PPR 299-325 aa PF12854 PPR_1 329-355 aa PF13812 PPR_3 329-378 aa PF13041 PPR_2 330-379 aa PF01535 PPR 333-362 aa PF12854 PPR_1 362-385 aa PF13041 PPR_2 365-412 aa PF01535 PPR 368-390 aa PF13812 PPR_3 398-449 aa PF13041 PPR_2 401-448 aa PF01535 PPR 403-429 aa PF12854 PPR_1 433-464 aa PF01535 PPR 439-468 aa PF13041 PPR_2 447-484 aa PF13812 PPR_3 456-480 aa PF12854 PPR_1 466-497 aa PF13041 PPR_2 470-518 aa PF01535 PPR 473-502 aa PF13812 PPR_3 494-549 aa PF12854 PPR_1 501-534 aa PF01535 PPR 508-538 aa PF13041 PPR_2 513-554 aa PF12854 PPR_1 536-568 aa PF13041 PPR_2 540-585 aa PF01535 PPR 543-573 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	82	131	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	148	177	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	152	202	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	155	178	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	186	204	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	192	218	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	220	272	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	223	251	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	225	274	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	229	258	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	256	288	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	260	309	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	263	291	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	285	342	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	292	324	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	299	325	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	329	355	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	329	378	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	330	379	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	333	362	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	362	385	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	365	412	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	368	390	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	398	449	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	401	448	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	403	429	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	433	464	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	439	468	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	447	484	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	456	480	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	466	497	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	470	518	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	473	502	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13812`	PPR_3	Repeat	494	549	2e-61	204.6	Pentatricopeptide repeat domain
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	501	534	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	508	538	1.1e-90	292.5	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	513	554	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF12854`	PPR_1	Repeat	536	568	6.2e-118	384.9	PPR repeat
`XP_057796406.1`	Pfam	`PF13041`	PPR_2	Repeat	540	585	1e-142	464.8	PPR repeat family
`XP_057796406.1`	Pfam	`PF01535`	PPR	Repeat	543	573	1.1e-90	292.5	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940423.1
TACCTAAACGCGATTACTCTTTAAACGGCCGAGATTCGATCAACAACATCCAACGGCTCACCATTAATCGGAATAACCACTTCCACTTCGCCTCTCTTCCCCAAAAACTGCAAAACTCGTTTTTCACCTTTCTTCTCAGAAAACCCTATCTTTCCTTCTTCAACAGCGACCTTCCCCAATTCTTCAGATTCCAATTGAAATCCTACAAAACTATCCCAAGAATGAGGTCGAACCACGCAGCCATATTTTTCGGTAGATTT...

CDS

1 records

下载 CDS FASTA

LOC131012467
ATGAGGTCGAACCACGCAGCCATATTTTTCGGTAGATTTTTGTCAAATTTTTCGTCTAAATTCTCCACTTTTGCCATCGGTTCTCCACATTATCAATCATTTCTTGTACCCAGTCTTAATTTTGATAATGCCAGCTGCCAAATTAGACACTTCTCCGCCTATCCCATATTTGATTTTGGATCTATACGTGAGCCCAATGATGCAGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTATAAATTT...

Protein

1 records

下载 Protein FASTA

XP_057796406.1
MRSNHAAIFFGRFLSNFSSKFSTFAIGSPHYQSFLVPSLNFDNASCQIRHFSAYPIFDFGSIREPNDAVALFRDMMRTEPLPSVINFNKLLTSVVKLKQYSAALHLFDKMLQRDAPVDHYTLSIAIDCYCRLKRPDFGFAILGIFFKRGYEPDVVTFNTLIKGLLFVGRIPEAAKVLWKLSVYQLCEHNERTYSTMINGLCKAGCTLMAIDLLCSLEKEKGICKPDVYAYNAVIDGLCNDGKVDHALQLFSSLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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