Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000074`

染色体: Chr02 坐标: 945915-948772 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000074`
名称	SmilChr02G000074
描述	protochlorophyllide reductase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	945915 - 948772 / `-`

ID 对照

NCBI Gene ID	`LOC131012481`
GeneID	`131012481`
locus_tag	`-`
NCBI Name	`LOC131012481`
原始查询	`SmilChr02G000074`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protochlorophyllide reductase-like
产物	protochlorophyllide reductase-like
Arabidopsis	`AT5G54190` (PORA) protochlorophyllide oxidoreductase A [Source:NCBI gene (formerly Entrezgene);Acc:835507] identity=74.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os10g0496900` (FGL) - identity=71.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0016630 (protochlorophyllide reductase activity)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:131012481

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796431.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057796432.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057796431.1`
4	Nucleus	细胞核	0.00000	`XP_057796431.1`
5	Chromosome	染色体	0.00000	`XP_057796431.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:946330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B54,B84,D11
`Chr2:946354`	`ATC`	`A`	2bp_deletion	frameshift_variant	3	B53,B78,D9
`Chr2:946354`	`ATC`	`A`	2bp_deletion	CDS_variant	3	B53,B78,D9
`Chr2:946387`	`AAC`	`A`	2bp_deletion	frameshift_variant	2	B95,C14
`Chr2:946387`	`AAC`	`A`	2bp_deletion	CDS_variant	2	B95,C14
`Chr2:946389`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B104,B6,C64,C87
`Chr2:946389`	`C`	`CA`	1bp_insertion	CDS_variant	4	B104,B6,C64,C87
`Chr2:946510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B78,D9
`Chr2:946678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B25,B9
`Chr2:946723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,C29
`Chr2:947009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:947042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796431.1

424 aa

212

424

adh_short

adh_short_C2

PF08659 KR 85-177 aa PF00106 adh_short 87-229 aa PF13561 adh_short_C2 91-225 aa

XP_057796432.1

397 aa

198

397

adh_short

adh_short_C2

PF08659 KR 85-177 aa PF00106 adh_short 87-229 aa PF13561 adh_short_C2 91-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796431.1`	Pfam	`PF08659`	KR	Family	85	177	1.1e-08	36.0	KR domain
`XP_057796431.1`	Pfam	`PF00106`	adh_short	Domain	87	229	4.6e-20	72.6	short chain dehydrogenase
`XP_057796431.1`	Pfam	`PF13561`	adh_short_C2	Domain	91	225	5.8e-10	39.9	Enoyl-(Acyl carrier protein) reductase
`XP_057796432.1`	Pfam	`PF08659`	KR	Family	85	177	1e-08	36.0	KR domain
`XP_057796432.1`	Pfam	`PF00106`	adh_short	Domain	87	229	3.9e-20	72.9	short chain dehydrogenase
`XP_057796432.1`	Pfam	`PF13561`	adh_short_C2	Domain	91	225	5.5e-10	39.9	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940449.1
ACATAAAAAATGAGAGTGAAAATCCAAACTCGAATTCTGATTGGACCGTTGTGGGATACATTCATCCTTCAATCCAATCACCACCTTATCCATTCCCGCTTTAATTTCCCCCCTTTTCACGACAGCAATTTTTTAGACACAAATCTCCCATTTCGACGAATTCATCTCATTTTTTCGAATTCCAGAAGAAATTGGATACAAATTTCTCTATGGCTCTTCAAGCAGCTTCGTTGTTTCCCTCTACTCTCTGCATTTCGAAA...

XM_057940448.1
ACATAAAAAATGAGAGTGAAAATCCAAACTCGAATTCTGATTGGACCGTTGTGGGATACATTCATCCTTCAATCCAATCACCACCTTATCCATTCCCGCTTTAATTTCCCCCCTTTTCACGACAGCAATTTTTTAGACACAAATCTCCCATTTCGACGAATTCATCTCATTTTTTCGAATTCCAGAAGAAATTGGATACAAATTTCTCTATGGCTCTTCAAGCAGCTTCGTTGTTTCCCTCTACTCTCTGCATTTCGAAA...

CDS

2 records

下载 CDS FASTA

LOC131012481
ATGGCTCTTCAAGCAGCTTCGTTGTTTCCCTCTACTCTCTGCATTTCGAAAGAGAATAAGGGAATTGCAATAAAAGAGACATCTCTGTTTGGAGCTGCGCTGCCGGCAGGAATTAAAGCTGAATTTAGCCCATCTTTTCACAAGCAAGAGTTGAGGAAAAAGCTATCAAATGGAGCAATCAAGGCACAAACAGCAGCCACAGCTCCGGCCACCAACCAGGCCTCCTCGGAGAGGAAGAAAACCCTACGCAAGGGCAGCGT...

Protein

2 records

下载 Protein FASTA

XP_057796431.1
MALQAASLFPSTLCISKENKGIAIKETSLFGAALPAGIKAEFSPSFHKQELRKKLSNGAIKAQTAATAPATNQASSERKKTLRKGSVIITGASSGLGLAAAKSLAETGKWHVIMACRNFLKAEQAAKSAGMAKENYTVMHLDLASLDSVRQFVETFRRSEMPLDALVCNAAIYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLVHDFKKSDYPLKRLIIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLNGVGSSSM...

XP_057796432.1
MALQAASLFPSTLCISKENKGIAIKETSLFGAALPAGIKAEFSPSFHKQELRKKLSNGAIKAQTAATAPATNQASSERKKTLRKGSVIITGASSGLGLAAAKSLAETGKWHVIMACRNFLKAEQAAKSAGMAKENYTVMHLDLASLDSVRQFVETFRRSEMPLDALVCNAAIYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLVHDFKKSDYPLKRLIIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLNGVGSSSM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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