当前解析结果
SmilChr02G000077| 统一新 Gene ID | SmilChr02G000077 |
|---|---|
| 名称 | SmilChr02G000077 |
| 描述 | uncharacterized SmilChr02G000077 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 975786 - 976583 / + |
| NCBI Gene ID | LOC131013661 |
|---|---|
| GeneID | 131013661 |
| locus_tag | - |
| NCBI Name | LOC131013661 |
| 原始查询 | SmilChr02G000077 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| 产物 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013]; symbol=AT3G24255; hit=AT3G24255; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=31.2; qcov=0.581; evalue=1.31e-18; confidence=low |
| Rice | Os02g0118800- identity=29.1; qcov=0.558; evalue=2.72e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013661 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057797770.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057797770.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797770.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797770.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797770.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:975932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C31,C58 |
Chr2:975969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,B88 |
Chr2:975996 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B11 |
Chr2:975996 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B11 |
Chr2:976070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B92,C45,C76,C78 |
Chr2:976093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C87 |
Chr2:976094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C41 |
Chr2:976138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr2:976147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B92,C76 |
Chr2:976354 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A16,A19,B119,B124,B131,B133,B139,B15,B26,B27,B42,B52,B56,B63,B64,B70,B76,B88,C18,C2,C59,C60,C71,C75,D4 |
Chr2:976367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B76,C61,C8 |
Chr2:976381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,C37,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797770.1PF13966
zf-RVT 90-174 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797770.1 |
Pfam | PF13966 |
zf-RVT | Domain | 90 | 174 | 1.5e-21 | 77.6 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。