当前解析结果
SmilChr02G000082| 统一新 Gene ID | SmilChr02G000082 |
|---|---|
| 名称 | SmilChr02G000082 |
| 描述 | uncharacterized SmilChr02G000082 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 1080940 - 1082744 / + |
| NCBI Gene ID | LOC131012515 |
|---|---|
| GeneID | 131012515 |
| locus_tag | - |
| NCBI Name | LOC131012515 |
| 原始查询 | SmilChr02G000082 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=63.7; qcov=0.797; evalue=8.3e-173; confidence=high |
| Rice | Os09g0499600- identity=40.3; qcov=0.821; evalue=2.76e-90; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012515 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796497.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057796497.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057796497.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057796497.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057796497.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:1080949 |
CA |
C |
1bp_deletion | frameshift_variant | 18 | A10,B110,B124,B17,B27,B40,B46,B54,B67,B9,B94,C33,C34,C56,C80,C84,C85,D6 |
Chr2:1080960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,C82,D11,D3 |
Chr2:1080970 |
G |
A |
EMS_canonical_SNV | stop_gained | 38 | A23,A25,B100,B102,B103,B11,B114,B122,B128,B129,B133,B134,B14,B34,B38,B39,B41,B47,B48,B57,B61,B70,B75,B81,C18,C31,C32,C35,C4,C51,C53,C60,C67,C68,C76,C77,C8,C84 |
Chr2:1080971 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A4,A7,B135,B86 |
Chr2:1080971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,A7,B135,B86 |
Chr2:1080982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C60,C69,C71 |
Chr2:1081004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:1081011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:1081054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr2:1081085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,C52,D11 |
Chr2:1081089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr2:1081092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796497.1PF04937
DUF659 1-37 aa
PF05699
Dimer_Tnp_hAT 260-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796497.1 |
Pfam | PF04937 |
DUF659 | Domain | 1 | 37 | 1e-10 | 42.1 | Domain of unknown function (DUF659) |
XP_057796497.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 260 | 325 | 1.7e-12 | 47.7 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。