Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000086`

染色体: Chr02 坐标: 1128275-1130501 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000086`
名称	SmilChr02G000086
描述	uncharacterized SmilChr02G000086
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1128275 - 1130501 / `-`

ID 对照

NCBI Gene ID	`LOC131012493`
GeneID	`131012493`
locus_tag	`-`
NCBI Name	`LOC131012493`
原始查询	`SmilChr02G000086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	GO:0005634 (nucleus); GO:0016926 (protein desumoylation); GO:0016929 (deSUMOylase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:131012493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796462.1`
2	Chromosome	染色体	0.40000	`XP_057796462.1`
3	Telomere	端粒	0.20000	`XP_057796462.1`
4	Centromere	着丝粒	0.00000	`XP_057796462.1`
5	Chromatin	染色质	0.00000	`XP_057796462.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1128468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B53,B90,C59
`Chr2:1128475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:1128482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:1128503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B135,B52
`Chr2:1128684`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B50
`Chr2:1128684`	`A`	`AT`	1bp_insertion	CDS_variant	1	B50
`Chr2:1128687`	`AGG`	`A`	2bp_deletion	frameshift_variant	14	A13,A14,B105,B115,B139,B51,B55,B60,B83,B99,C4,C84,C85,D1
`Chr2:1128707`	`C`	`CT`	1bp_insertion	frameshift_variant	175	A1,A10,A11,A14,A16,A19,A2,A21,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B101,B102,B107,B108,B109,B112,B113,B114,B115,B117,B118,B119,B12,B121,B122,B123,B125,B126,B128,B129,B13,B130,B133,B134,B135,B136,B137,B138,B15,B16,B17,B18,B2,B20,B21,B22,B23,B24,B25,B29,B35,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B56,B57,B59,B6,B60,B61,B62,B64,B65,B66,B67,B68,B69,B7,B71,B74,B75,B77,B78,B8,B80,B81,B83,B86,B87,B88,B89,B9,B90,B92,B96,B98,B99,C1,C11,C12,C15,C16,C17,C19,C24,C25,C27,C28,C3,C31,C32,C33,C34,C35,C36,C38,C39,C40,C43,C44,C46,C47,C48,C49,C5,C50,C51,C53,C55,C58,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C76,C78,C79,C80,C82,C85,C86,C87,C9,D1,D10,D11,D3,D4
`Chr2:1128763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr2:1128764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr2:1128771`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B15,C25,D1
`Chr2:1128771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C25,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796462.1

309 aa

154

309

Peptidase_C48

PF02902 Peptidase_C48 102-273 aa

XP_057796463.1

309 aa

154

309

Peptidase_C48

PF02902 Peptidase_C48 102-273 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796462.1`	Pfam	`PF02902`	Peptidase_C48	Domain	102	273	4.2e-08	34.0	Ulp1 protease family, C-terminal catalytic domain
`XP_057796463.1`	Pfam	`PF02902`	Peptidase_C48	Domain	102	273	4.2e-08	34.0	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940479.1
ATAGTGGGATTGAAAATGTGGAAGTTATTGGAAAGCAAGATGCTGAGGTAAATATCAATGTTGACAAGATACTGCAAAAGCTTGAGAGGCCAATGAAGGAAATTTATGAGATTCCTTCTTTTAAGCTTTGGAGTCAAACATCTTCATTGGGAGATGATGAAGCCGAAAAGGAGAAAGGGGATTGTCTTGAGAAGCAGACTGAAGTTGAAGATCCAAAGAAATAAGAAAAAGTGAAAAGCATTGAAAAGTGTAGTGAGGAT...

XM_057940480.1
GGTCAATGCAGGTATGAAATTTTTCTGCAGCATTGAATTAATTTATTATCAGTTTTTATAATAGTTAATTGCCTAGTATAATATTTACATACAATAGAAGTAATCATTGCCTTTAAGAAAAGTAATTTTCCTTGTTTATTTTGTGCTTGTAGTTGAGAATGTCGCCATTATTGATCCTATGAAATGGAACTCTGATTCTGATTGGATCATTGAAAAACCATCATTCAAGAGCAGAATCATAATGAACAATGCAAAGTATT...

CDS

2 records

下载 CDS FASTA

LOC131012493
ATGAAATGGAACTCTGATTCTGATTGGATCATTGAAAAACCATCATTCAAGAGCAGAATCATAATGAACAATGCAAAGTATTGGAAGGACATGTCTAGGCGACAGAAAGACATTGCTGATTTTTGCTTTCATGAGCATCGACCTATGAACACGAGCAACGTATTCAAACATGATCTTCACTGTTGGAGGTTTGTTGTGGACTTCAATGGCATTAGGTCATTGAATGAGGGTGTATTCATTGACACTATTGTCATTGATGC...

Protein

2 records

下载 Protein FASTA

XP_057796462.1
MKWNSDSDWIIEKPSFKSRIIMNNAKYWKDMSRRQKDIADFCFHEHRPMNTSNVFKHDLHCWRFVVDFNGIRSLNEGVFIDTIVIDAWALILNKSVQYHNAQNSYLTRKFYFNTQHSSYLQGMLRATDPAVIDRMGYNARSCWHFSMKQMLQLNDLKNIQFFFIPICVNNHFIAVVVNFEHRKIQYLDNILGNCEEDSDVWKLLDIVKNQFSISLLDMEHPKALDMEYFPIEDVPFDWKSAKTNIDCGVFLMHHMEFFNG...

XP_057796463.1
MKWNSDSDWIIEKPSFKSRIIMNNAKYWKDMSRRQKDIADFCFHEHRPMNTSNVFKHDLHCWRFVVDFNGIRSLNEGVFIDTIVIDAWALILNKSVQYHNAQNSYLTRKFYFNTQHSSYLQGMLRATDPAVIDRMGYNARSCWHFSMKQMLQLNDLKNIQFFFIPICVNNHFIAVVVNFEHRKIQYLDNILGNCEEDSDVWKLLDIVKNQFSISLLDMEHPKALDMEYFPIEDVPFDWKSAKTNIDCGVFLMHHMEFFNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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