Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000094`

染色体: Chr02 坐标: 1230404-1234263 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000094`
名称	SmilChr02G000094
描述	riboflavin biosynthesis protein PYRD, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1230404 - 1234263 / `-`

ID 对照

NCBI Gene ID	`LOC131012483`
GeneID	`131012483`
locus_tag	`-`
NCBI Name	`LOC131012483`
原始查询	`SmilChr02G000094`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	riboflavin biosynthesis protein PYRD, chloroplastic-like
产物	riboflavin biosynthesis protein PYRD%2C chloroplastic-like
Arabidopsis	`AT4G20960` (PyrD) Cytidine/deoxycytidylate deaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827843] identity=59.3; qcov=1.01; evalue=1.4e-143; confidence=high
Rice	`Os03g0117200` - identity=51.9; qcov=1.03; evalue=3.91e-110; confidence=high
GO	GO:0008270 (zinc ion binding); GO:0008703 (5-amino-6-(5-phosphoribosylamino)uracil reductase activity); GO:0008835 (diaminohydroxyphosphoribosylaminopyrimidine deaminase activity); GO:0009231 (riboflavin biosynthetic process)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00383 (dCMP_cyt_deam_1); PF01872 (RibD_C); PF14437 (MafB19-deam)
InterPro	-
eggNOG	-
NR	GeneID:131012483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796435.1`
2	Cytoplasm	细胞质	1.00000	`XP_057796436.1`
3	Chloroplast stroma	叶绿体基质	1.00000	`XP_057796435.1`
4	Cytosol	细胞质基质	1.00000	`XP_057796436.1`
5	Nucleus	细胞核	0.20000	`XP_057796436.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1230766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B20,D2
`Chr2:1230840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B54,B94,C41,C77
`Chr2:1230873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B94,C31,C41,C77
`Chr2:1230920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A25,D10
`Chr2:1230932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B138,B15,B55
`Chr2:1230968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:1231194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr2:1231228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:1231260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B32,B51,C3
`Chr2:1231334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:1231545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B34,B36,B37
`Chr2:1231652`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796435.1

407 aa

204

407

MafB19-deam

dCMP_cyt_deam_1

RibD_C

PF14437 MafB19-deam 61-165 aa PF00383 dCMP_cyt_deam_1 63-160 aa PF01872 RibD_C 207-392 aa

XP_057796436.1

352 aa

176

352

MafB19-deam

dCMP_cyt_deam_1

RibD_C

PF14437 MafB19-deam 6-110 aa PF00383 dCMP_cyt_deam_1 8-105 aa PF01872 RibD_C 152-337 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796435.1`	Pfam	`PF14437`	MafB19-deam	Family	61	165	1.6e-09	38.5	MafB19-like deaminase
`XP_057796435.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	63	160	3.6e-21	75.7	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057796435.1`	Pfam	`PF01872`	RibD_C	Domain	207	392	2.8e-08	34.5	RibD C-terminal domain
`XP_057796436.1`	Pfam	`PF14437`	MafB19-deam	Family	6	110	1.2e-09	38.9	MafB19-like deaminase
`XP_057796436.1`	Pfam	`PF00383`	dCMP_cyt_deam_1	Domain	8	105	2.8e-21	76.0	Cytidine and deoxycytidylate deaminase zinc-binding region
`XP_057796436.1`	Pfam	`PF01872`	RibD_C	Domain	152	337	1.9e-08	35.1	RibD C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940452.1
ATGGGGCCTCAATTTAAATTTACCATTTTCCTAATCTAGTTCCTTGTTTGTAAAACCCAAACCCCTCATTTCAGCTTTTTATTCATCTCTCCTCCATTCTTTAGAGAGAGAAAACTGGGCAAGATTGGCGCACACTAGCAGACGGAAATTTGGAGGGGAGGTTTTTGGGGTATTGCGAATTGAAGAAACAAGGAACAAAACCCTAGGCGAAGGCGAATCCCATTTTGTCAGCAATATTCCATCTCCGGTATGTATGCTCA...

XM_057940453.1
GTAAAACCCAAACCCCTCATTTCAGCTTTTTATTCATCTCTCCTCCATTCTTTAGAGAGAGAAAACTGGGCAAGATTGGCGCACACTAGCAGACGGAAATTTGGAGGGGAGGTTTTTGGGGTATTGCGAATTGAAGAAACAAGGAACAAAACCCTAGGCGAAGGCGAATCCCATTTTGTCAGCAATATTCCATCTCCGGGTTTCTGAAACAAAAACCAGTTTGGGAAACGGCGCTCGTTTGGCTGCGATCAGGTGCAGCG...

CDS

2 records

下载 CDS FASTA

LOC131012483
ATGTATGCTCAAATGCTACCTCTTCCAATTCCCACCCACACTTCCCACAATCCAACCTTCTCATCAAAATCAAGATTTGGGCTCTGCAATTCTCCAAAAAGGGTTTCTGAAACAAAAACCAGTTTGGGAAACGGCGCTCGTTTGGCTGCGATCAGGTGCAGCGAAATGCAAGCAGATAAATTTGACCATGTGTATTATATGAGGCGCTGCGTTGAGCTCGCGAGGAAGGCGATTGGCTGCACCAGTCCTAATCCTATGGT...

LOC131012483
ATGCAAGCAGATAAATTTGACCATGTGTATTATATGAGGCGCTGCGTTGAGCTCGCGAGGAAGGCGATTGGCTGCACCAGTCCTAATCCTATGGTTGGTTGTGTGATTGTCAAGGATGGCAAGATTGTTGGAGAAGGCTTCCACCCTAAAGCTGGGCAGCCTCATGCTGAGGTTTTTGCATTGAGAGACGCGGGTGATTTGGCCGAGAATGCAACAGCATATGTTAGTTTAGAACCATGCAATCATTATGGAAGAACTCC...

Protein

2 records

下载 Protein FASTA

XP_057796435.1
MYAQMLPLPIPTHTSHNPTFSSKSRFGLCNSPKRVSETKTSLGNGARLAAIRCSEMQADKFDHVYYMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCSEALIKARVKNVVVGMVDPNPIVASTGVKKLQDAGIEVTVGVEEELCKRLNEAYIHYMLTRKPYVTLRYSMSLDGHLLDQLGEEAVECGGYYSKLLQEYDAIIVPSAALADKSSIP...

XP_057796436.1
MQADKFDHVYYMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCSEALIKARVKNVVVGMVDPNPIVASTGVKKLQDAGIEVTVGVEEELCKRLNEAYIHYMLTRKPYVTLRYSMSLDGHLLDQLGEEAVECGGYYSKLLQEYDAIIVPSAALADKSSIPISKEPGANQPLKIVLSWNPMTEIPALEDDGASKLLIVTDKDTGDKQETAQGVQTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器