Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000109`

染色体: Chr02 坐标: 1380448-1383466 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000109`
名称	SmilChr02G000109
描述	mitochondrial inner membrane protein OXA1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1380448 - 1383466 / `-`

ID 对照

NCBI Gene ID	`LOC131012489`
GeneID	`131012489`
locus_tag	`-`
NCBI Name	`LOC131012489`
原始查询	`SmilChr02G000109`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial inner membrane protein OXA1-like
产物	mitochondrial inner membrane protein OXA1-like
Arabidopsis	`AT2G46470` (OXA1L) inner membrane protein OXA1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819256] identity=32.4; qcov=1.05; evalue=3.37e-35; confidence=low
Rice	`Os10g0521300` - identity=31.8; qcov=0.718; evalue=3.31e-23; confidence=low
GO	GO:0005743 (mitochondrial inner membrane); GO:0032977 (membrane insertase activity); GO:0032979 (protein insertion into mitochondrial inner membrane from matrix); GO:0033617 (mitochondrial respiratory chain complex IV assembly)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF02096 (60KD_IMP)
InterPro	-
eggNOG	-
NR	GeneID:131012489

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796452.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057796452.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057796452.1`
4	Nucleus	细胞核	0.00000	`XP_057796452.1`
5	Chromosome	染色体	0.00000	`XP_057796452.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1380639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr2:1380992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C41
`Chr2:1381014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,C34,C56,C7,D6
`Chr2:1381057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,B45
`Chr2:1381236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B16,C34,C56,C7,D6
`Chr2:1381609`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B16
`Chr2:1381609`	`AC`	`A`	1bp_deletion	CDS_variant	1	B16
`Chr2:1381976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C82,D10,D11
`Chr2:1381994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:1382038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B56,B96,C55,C87
`Chr2:1382048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr2:1382228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796452.1

382 aa

191

382

60KD_IMP

PF02096 60KD_IMP 176-363 aa

XP_057796453.1

351 aa

176

351

60KD_IMP

PF02096 60KD_IMP 145-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796452.1`	Pfam	`PF02096`	60KD_IMP	Domain	176	363	2.6e-11	44.4	60Kd inner membrane protein
`XP_057796453.1`	Pfam	`PF02096`	60KD_IMP	Domain	145	332	2.1e-11	44.7	60Kd inner membrane protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940469.1
TTAATTCCTAAAAAGGAAAGGAATAAAGAGGAAAAGAAAAAGGAAGAAAGTGAGTAGCTAACTTTAGATCACTCATTATCAGCTTAAAAGCTAGCTTTTCCTCTACAGCTTAAAACCTGTGGAGATTCCCCCTCATCGGTCAATTCTAAAACCCTAGTAAGATTTTCATTTTCAGTTTTATGTTAATAAAAGCATGTCGCCTTTTTTTGGGAGATCGTAAACCCCCGTTAAAGATACGCTTGAAAACATTCAATTTTGAG...

XM_057940470.1
AATTCCTAAAAAGGAAAGGAATAAAGAGGAAAAGAAAAAGGAAGAAAGTGAGTAGCTAACTTTAGATCACTCATTATCAGCTTAAAAGCTAGCTTTTCCTCTACAGCTTAAAACCTGTGGAGATTCCCCCTCATCGGTCAATTCTAAAACCCTAGTCGCGGAAGTAATGGCGTATAGGCGTAGCATCATAGCTAAAACTAAGTTGTTTTATCAACAGCACCAGCGATTTGCCCCTTCTTTTTCACATATGAGTGGTAGCG...

CDS

2 records

下载 CDS FASTA

LOC131012489
ATGTTAATAAAAGCATGTCGCCTTTTTTTGGGAGATCGTAAACCCCCGTTAAAGATACGCTTGAAAACATTCAATTTTGAGGTCGCGGAAGTAATGGCGTATAGGCGTAGCATCATAGCTAAAACTAAGTTGTTTTATCAACAGCACCAGCGATTTGCCCCTTCTTTTTCACATATGAGTGGTAGCGATCGCTACGAATTGCCTGCTAAAAGCATTAACAGGAATACTGAGATCCGAAGCCATTTTCAGATTACCGGAAA...

LOC131012489
ATGGCGTATAGGCGTAGCATCATAGCTAAAACTAAGTTGTTTTATCAACAGCACCAGCGATTTGCCCCTTCTTTTTCACATATGAGTGGTAGCGATCGCTACGAATTGCCTGCTAAAAGCATTAACAGGAATACTGAGATCCGAAGCCATTTTCAGATTACCGGAAACATTGCCAGCAATTCCCTGCTACCAGGAAGTGTCTCTCGACTCATGCGATCTGAGTTTCAAACAGGCTATGGGCTGAATTTCCAGAGAAATAT...

Protein

2 records

下载 Protein FASTA

XP_057796452.1
MLIKACRLFLGDRKPPLKIRLKTFNFEVAEVMAYRRSIIAKTKLFYQQHQRFAPSFSHMSGSDRYELPAKSINRNTEIRSHFQITGNIASNSLLPGSVSRLMRSEFQTGYGLNFQRNMSKLPSDIEGLHDAGDLYGAISAVGEKAVEVAPVVNEAAVAAADSINYLNLIEVFHCCAGLEWWASIAATTLLMRFILVPFQIYLLQFCSKNYTAIVKHVRHLQISDILNENNEKGKAWRKLVSRYDKFQYMGFKASLISGIC...

XP_057796453.1
MAYRRSIIAKTKLFYQQHQRFAPSFSHMSGSDRYELPAKSINRNTEIRSHFQITGNIASNSLLPGSVSRLMRSEFQTGYGLNFQRNMSKLPSDIEGLHDAGDLYGAISAVGEKAVEVAPVVNEAAVAAADSINYLNLIEVFHCCAGLEWWASIAATTLLMRFILVPFQIYLLQFCSKNYTAIVKHVRHLQISDILNENNEKGKAWRKLVSRYDKFQYMGFKASLISGICFYVWVSYMANNVPSFTTGGTLWFTDLTAFGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器