当前解析结果
SmilChr02G000149| 统一新 Gene ID | SmilChr02G000149 |
|---|---|
| 名称 | SmilChr02G000149 |
| 描述 | uncharacterized SmilChr02G000149 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 1982500 - 1983985 / - |
| NCBI Gene ID | LOC131012567 |
|---|---|
| GeneID | 131012567 |
| locus_tag | - |
| NCBI Name | LOC131012567 |
| 原始查询 | SmilChr02G000149 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=high |
| 产物 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G07510 (AT3G07510)maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939] identity=81.6; qcov=0.932; evalue=2.75e-89; confidence=high |
| Rice | Os10g0178200- identity=64.5; qcov=0.896; evalue=3.41e-68; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012567 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796532.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057796532.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057796532.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796532.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796532.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:1983199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:1983254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:1983362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr2:1983391 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr2:1983391 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C8 |
Chr2:1983551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr2:1983607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:1983623 |
CG |
C |
1bp_deletion | frameshift_variant | 29 | A1,A23,A3,B119,B12,B122,B127,B131,B21,B46,B49,B75,B76,B9,B95,C1,C14,C2,C27,C41,C49,C55,C72,C73,C82,C85,C86,D3,D8 |
Chr2:1983626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B12,B99,C71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。