Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000151`

染色体: Chr02 坐标: 1992551-1995058 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000151`
名称	SmilChr02G000151
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1992551 - 1995058 / `+`

ID 对照

NCBI Gene ID	`LOC131012565`
GeneID	`131012565`
locus_tag	`-`
NCBI Name	`LOC131012565`
原始查询	`SmilChr02G000151`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=35.6; qcov=0.933; evalue=6.8e-131; confidence=medium
Rice	`Os08g0107800` - identity=30.9; qcov=0.928; evalue=1.9e-88; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131012565

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057796531.1`
2	Chloroplast	叶绿体	0.20000	`XP_057796531.1`
3	Nucleus	细胞核	0.00000	`XP_057796531.1`
4	Chromosome	染色体	0.00000	`XP_057796531.1`
5	Centromere	着丝粒	0.00000	`XP_057796531.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1993465`	`G`	`GC`	1bp_insertion	frameshift_variant	134	A1,A10,A11,A19,A2,A20,A22,A23,A3,A5,A7,A8,B1,B10,B100,B101,B105,B106,B107,B109,B110,B113,B115,B117,B119,B12,B122,B123,B124,B127,B128,B13,B131,B132,B135,B138,B139,B140,B17,B19,B2,B21,B22,B23,B27,B31,B32,B35,B38,B41,B42,B43,B44,B47,B48,B51,B52,B55,B60,B64,B65,B67,B68,B69,B70,B74,B75,B82,B84,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B97,B98,B99,C1,C10,C11,C13,C14,C16,C17,C19,C23,C25,C28,C3,C30,C35,C36,C38,C39,C4,C41,C45,C47,C48,C49,C50,C51,C53,C55,C57,C59,C6,C61,C62,C65,C66,C69,C7,C71,C75,C76,C77,C78,C79,C8,C81,C83,C85,C86,C87,D1,D11,D4,D8
`Chr2:1993470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,C51,C8
`Chr2:1993496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B86,C10,C51,C8
`Chr2:1993523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr2:1993538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr2:1993616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:1993623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr2:1993718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr2:1993812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:1993949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C85
`Chr2:1993997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B118,B86,C33,C43
`Chr2:1994183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,C17,C31,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796531.1

611 aa

306

611

PPR_2

PPR_1

PPR_2

PPR

PPR_1

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_1

PPR

TPR_24

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PF13041 PPR_2 82-131 aa PF12854 PPR_1 148-177 aa PF13041 PPR_2 152-202 aa PF01535 PPR 155-178 aa PF12854 PPR_1 186-204 aa PF01535 PPR 192-218 aa PF23276 TPR_24 204-317 aa PF13812 PPR_3 220-272 aa PF12854 PPR_1 223-251 aa PF13041 PPR_2 225-274 aa PF01535 PPR 229-258 aa PF12854 PPR_1 256-288 aa PF13041 PPR_2 260-309 aa PF01535 PPR 263-291 aa PF13812 PPR_3 285-342 aa PF12854 PPR_1 293-324 aa PF01535 PPR 299-325 aa PF12854 PPR_1 329-355 aa PF13812 PPR_3 329-378 aa PF13041 PPR_2 330-379 aa PF01535 PPR 333-362 aa PF12854 PPR_1 362-385 aa PF13041 PPR_2 365-409 aa PF01535 PPR 368-390 aa PF13812 PPR_3 398-449 aa PF13041 PPR_2 401-448 aa PF01535 PPR 403-430 aa PF12854 PPR_1 433-464 aa PF01535 PPR 439-468 aa PF23276 TPR_24 440-501 aa PF13041 PPR_2 443-484 aa PF13812 PPR_3 455-480 aa PF12854 PPR_1 466-497 aa PF13041 PPR_2 470-518 aa PF01535 PPR 473-502 aa PF13812 PPR_3 494-549 aa PF12854 PPR_1 501-534 aa PF13041 PPR_2 505-554 aa PF01535 PPR 508-538 aa PF12854 PPR_1 536-568 aa PF01535 PPR 543-573 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	82	131	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	148	177	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	152	202	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	155	178	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	186	204	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	192	218	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF23276`	TPR_24	Repeat	204	317	5.8e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	220	272	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	223	251	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	225	274	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	229	258	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	256	288	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	260	309	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	263	291	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	285	342	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	293	324	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	299	325	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	329	355	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	329	378	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	330	379	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	333	362	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	362	385	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	365	409	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	368	390	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	398	449	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	401	448	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	403	430	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	433	464	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	439	468	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF23276`	TPR_24	Repeat	440	501	5.8e-28	98.2	Pentatricopeptide repeat-containing protein
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	443	484	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	455	480	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	466	497	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	470	518	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	473	502	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF13812`	PPR_3	Repeat	494	549	6e-64	212.7	Pentatricopeptide repeat domain
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	501	534	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF13041`	PPR_2	Repeat	505	554	1.5e-148	483.5	PPR repeat family
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	508	538	1.3e-89	289.1	PPR repeat
`XP_057796531.1`	Pfam	`PF12854`	PPR_1	Repeat	536	568	3.1e-117	382.6	PPR repeat
`XP_057796531.1`	Pfam	`PF01535`	PPR	Repeat	543	573	1.3e-89	289.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940548.1
TAGCAAAGTTTAAGTTCAAGCACAAAAAAACTATATTTATATATAAATTCATGTTCTAATTCGAGCCAAACTCAAAAATTAATTATGAAAGTCATAATCATATTTTTAGAGGAGCTAAATCTGATTACTTAAAATAAAATTGAGAGATGCTTTTGGAAGATGATAACATAAATTACAAAATACTGGATGAATGCGTTTTCTTCAATACCTAAACGCGATTACTCTTTAAACGGCCGAGATTCGATCAACAACATCCAACG...

CDS

1 records

下载 CDS FASTA

LOC131012565
ATGAGGTCGAACCACGCAGCCATATTTTTCGGTAGATTTTTGTCAATTTTTTCGTCTAAATTCTCCACTTTTGCCATCGGTTCTCCACATTATCAATCATTTCTTGTACCCAGTCTTAATTTTGATAATGCCAGCTGCCAAATTAGACACTTCTTCGCCTATCCCAGATTTGATTTTGGATCTATACGTGAGCCCAATGATGCAGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTATAAATTT...

Protein

1 records

下载 Protein FASTA

XP_057796531.1
MRSNHAAIFFGRFLSIFSSKFSTFAIGSPHYQSFLVPSLNFDNASCQIRHFFAYPRFDFGSIREPNDAVALFRDMMRTEPLPSVINFNKLLTSVVKLKQYSAALHLFDKMLQRDAPVDHYTLSIAIDCYCRLKRPDFGFAILGIFFKRGYEPDVVTFNTLIKGLLFVGRIPEAAKVLWKLSVYQLCEHNERTYSTMINGLCKAGCTLMAIDLLCSLEKEKGICKPDVYAYNAVIDGLCNDGKVDHALQLFSTLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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