Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000152`

染色体: Chr02 坐标: 1996854-2000216 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000152`
名称	SmilChr02G000152
描述	protein STABILIZED1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1996854 - 2000216 / `-`

ID 对照

NCBI Gene ID	`LOC131012564`
GeneID	`131012564`
locus_tag	`-`
NCBI Name	`LOC131012564`
原始查询	`SmilChr02G000152`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein STABILIZED1-like
产物	protein STABILIZED1-like
Arabidopsis	`AT4G03430` (EMB2770) pre-mRNA splicing factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827925] identity=76.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os10g0498600` (Du1) - identity=78.7; qcov=1.01; evalue=0; confidence=high
GO	GO:0000244 (spliceosomal tri-snRNP complex assembly); GO:0000398 (mRNA splicing, via spliceosome); GO:0005515 (protein binding); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071013 (catalytic step 2 spliceosome); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:2000630 (positive regulation of miRNA metabolic process); GO:2000636 (positive regulation of primary miRNA processing)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF05843 (Suf); PF06424 (PRP1_N); PF13181 (TPR_8); PF13428 (TPR_14)
InterPro	-
eggNOG	-
NR	GeneID:131012564

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796530.1`
2	Nucleoplasm	核质	0.40000	`XP_057796530.1`
3	Nucleolus	核仁	0.20000	`XP_057796530.1`
4	Chromosome	染色体	0.00000	`XP_057796530.1`
5	Centromere	着丝粒	0.00000	`XP_057796530.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1997323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:1997410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,A20,B122,C41
`Chr2:1997419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:1997437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B68,B83,B84,C80,D3
`Chr2:1997468`	`C`	`T`	EMS_canonical_SNV	stop_gained	23	A15,A16,B114,B124,B125,B138,B51,B52,B68,B7,B72,C17,C20,C26,C30,C35,C41,C46,C52,C57,C64,C66,C87
`Chr2:1997601`	`GC`	`G`	1bp_deletion	frameshift_variant	59	A1,A2,A6,A7,A8,B101,B121,B129,B131,B135,B137,B19,B25,B35,B38,B39,B47,B52,B54,B57,B61,B63,B64,B73,B76,B78,B79,B8,B83,B86,B88,B89,B90,B92,C12,C17,C18,C29,C3,C30,C31,C36,C38,C44,C45,C50,C51,C53,C55,C56,C70,C75,C78,C80,C84,C87,C9,D1,D5
`Chr2:1997824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,B74,C17
`Chr2:1997825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr2:1997913`	`G`	`A`	EMS_canonical_SNV	stop_gained	19	A10,B118,B126,B24,B29,B59,B63,B64,B76,B83,B98,C16,C39,C41,C45,C52,C8,C81,D2
`Chr2:1997935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B45,B73,C64,C70
`Chr2:1997975`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	A10,B29,B64,B76,B83,C16,C39,C45,C52,C8,D2
`Chr2:1997985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796530.1

1024 aa

512

1024

PRP1_N

TPR_14

Suf

TPR_8

PF06424 PRP1_N 98-263 aa PF13428 TPR_14 384-427 aa PF05843 Suf 418-572 aa PF13181 TPR_8 785-812 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796530.1`	Pfam	`PF06424`	PRP1_N	Domain	98	263	9.1e-55	185.8	PRP1 splicing factor, N-terminal
`XP_057796530.1`	Pfam	`PF13428`	TPR_14	Repeat	384	427	3.7e-42	139.1	Tetratricopeptide repeat
`XP_057796530.1`	Pfam	`PF05843`	Suf	Repeat	418	572	7.4e-20	71.7	Suppressor of forked protein (Suf)
`XP_057796530.1`	Pfam	`PF13181`	TPR_8	Repeat	785	812	1.3e-08	35.0	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940547.1
TATTTTGACAAGAAAAAAGATATAAAAGAAAAAGGAAATAAAAAATCGGCTATATGCGATTATAGATACACACAAACTATCTCTCGCAAACACTCCGATTACTACGTCGGAAAAGCCTTCTTCTCCGGCGAATTTGGCCGCCTCTCTTTCCCCTTTCCCCCAATTTTACGGTTTAAACCCTAAATATGGTGTTTGTCCAATCCCCTTTCCACAAAACCCTAACCGTCAATCTTAATCCTTCGACCACCACTTTACAGGCC...

CDS

1 records

下载 CDS FASTA

LOC131012564
ATGGTGTTTGTCCAATCCCCTTTCCACAAAACCCTAACCGTCAATCTTAATCCTTCGACCACCACTTTACAGGCCCTCAGCCTCCACCTCCAGCGCAACCACCTCATACCAATTTCTCAGCAGCGCCTCTACCTGTCGCCGCGCCTCCTCTCTAATCACGAAAATGACGCCGTGTTCCTGTCCGATTTGGGGGTTTCCCCAAATTCAACCCTAACCCTACACATCCCTTTCCTCGGCGGTATGCAGGCGCCCGTGGCTCC...

Protein

1 records

下载 Protein FASTA

XP_057796530.1
MVFVQSPFHKTLTVNLNPSTTTLQALSLHLQRNHLIPISQQRLYLSPRLLSNHENDAVFLSDLGVSPNSTLTLHIPFLGGMQAPVAPKVRTDFLNTKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSAAAIGAPGAPGVGRGRGKGAGEEEEEEESEEKGYDENQKFDEFEGNDAGLFASAEYDDEDKEADAVWEAIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKRKLYTLSTEEWDSIPEIGDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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