Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr02G000153`

Chromosome: Chr02 Coordinates: 2013847-2016994 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr02G000153`
Name	SmilChr02G000153
Description	probable polyol transporter 4
Chromosome / SeqID	Chr02 / NC_080388.1
Coordinates and Strand	2013847 - 2016994 / `+`

ID Mapping

NCBI Gene ID	`LOC131012570`
GeneID	`131012570`
locus_tag	`-`
NCBI Name	`LOC131012570`
Original query	`SmilChr02G000153`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	probable polyol transporter 4
Product	probable polyol transporter 4
Arabidopsis	`AT2G20780` (AT2G20780) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816607] identity=69.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0529800` - identity=63.7; qcov=0.968; evalue=0; confidence=high
GO	GO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:131012570

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057796536.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057796536.1`
3	Nucleus	细胞核	0.00000	`XP_057796536.1`
4	Chromosome	染色体	0.00000	`XP_057796536.1`
5	Centromere	着丝粒	0.00000	`XP_057796536.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr2:2014243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr2:2015356`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C62
`Chr2:2015356`	`GC`	`G`	1bp_deletion	CDS_variant	1	C62
`Chr2:2015368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr2:2015453`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C15
`Chr2:2015453`	`G`	`GC`	1bp_insertion	CDS_variant	1	C15
`Chr2:2015458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:2015461`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C15
`Chr2:2015461`	`CG`	`C`	1bp_deletion	CDS_variant	1	C15
`Chr2:2015514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:2015572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B77,B99,C11,C27,C69
`Chr2:2015602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057796536.1

532 aa

266

532

Sugar_tr

MFS_1

PF00083 Sugar_tr 66-509 aa PF07690 MFS_1 71-458 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057796536.1`	Pfam	`PF00083`	Sugar_tr	Family	66	509	7.1e-108	362.1	Sugar (and other) transporter
`XP_057796536.1`	Pfam	`PF07690`	MFS_1	Family	71	458	1.8e-32	113.3	Major Facilitator Superfamily

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057940553.1
ATCAAACCTTGGACAAGTAAAAAGTCAAGAACGTGTGATGGCATTCTGCAAACCAAATAAAAAAATAAATTAAAAAAAGAATTAACAAAAATGGGATTTTCTTACATGAACCAAAAAGAAGTTCCCCACTTGTCAATTAAAAGTCTTCATCACTCCCAATTTCAGATCTGCAAAACAAGCCCTCTTCTCCCCCAACCCCCACACCTGTCCACTGTTTCAAGAATCTAAGCTGAGAGCTCTTGAAACCGTTGCAAAGTTCC...

CDS

1 records

Download CDS FASTA

LOC131012570
ATGGGCCTGCCCAAAATCCAAGAAAATGGGAACGTGGAGATGGGCTTGCCGTTGGGAGCCAGCAACAAATACACAAGAATGGATGATGACTCTGAGCTGAGAAACGGCGACGTTTTTGGTGAAGATTATGATGCGGCGGAGCACCACCGTCAGATGCAGCGGAGCAAAACCACTCGGAAATATGTGTTTGCTTGCTCTGTTTTCGCCTCTCTCAACAGCGTGCTTCTTGGCTACGATGTGGGAGTGATGAGTGGAGCAAT...

Protein

1 records

Download Protein FASTA

XP_057796536.1
MGLPKIQENGNVEMGLPLGASNKYTRMDDDSELRNGDVFGEDYDAAEHHRQMQRSKTTRKYVFACSVFASLNSVLLGYDVGVMSGAILFIQEDLKITEVQQEVLIGILSVMSLLGSLGGGRTSDAIGRKWTMGLAAIVFQLGAVVMTFAPTFRVLMIGRILSGIGIGFGVMIAPVYIAEISPTIARGSLTSFPEIFINLGILLGYVSNYVFSGLPAHTNWRVMLAVGILPSIFIAFALCIIPESPRWLVLQGRIEEARSV...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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