Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000164`

染色体: Chr02 坐标: 2130772-2132826 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000164`
名称	SmilChr02G000164
描述	uncharacterized SmilChr02G000164
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	2130772 - 2132826 / `-`

ID 对照

NCBI Gene ID	`LOC131012578`
GeneID	`131012578`
locus_tag	`-`
NCBI Name	`LOC131012578`
原始查询	`SmilChr02G000164`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839021]; symbol=AT1G03650; hit=AT1G03650; species=arabidopsis; confidence=high
产物	Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839021]; symbol=AT1G03650; hit=AT1G03650; species=arabidopsis; confidence=high
Arabidopsis	`AT1G03650` (AT1G03650) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839021] identity=68.7; qcov=0.955; evalue=2.14e-78; confidence=high
Rice	`Os10g0500400` - identity=50.6; qcov=1.06; evalue=8.85e-56; confidence=high
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro	-
eggNOG	-
NR	GeneID:131012578

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057796543.1`
2	Nucleus	细胞核	0.40000	`XP_057796543.1`
3	Cytosol	细胞质基质	0.20000	`XP_057796543.1`
4	Chromosome	染色体	0.00000	`XP_057796543.1`
5	Centromere	着丝粒	0.00000	`XP_057796543.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:2131182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B83,C36,C83,D2
`Chr2:2131279`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B101,B24,B33
`Chr2:2131280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:2131292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,C13,C74,D1
`Chr2:2132673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796543.1

157 aa

157

Acetyltransf_1

Acetyltransf_10

Acetyltransf_7

FR47

PF00583 Acetyltransf_1 25-131 aa PF13673 Acetyltransf_10 29-150 aa PF13508 Acetyltransf_7 58-133 aa PF08445 FR47 75-134 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796543.1`	Pfam	`PF00583`	Acetyltransf_1	Family	25	131	1e-19	71.7	Acetyltransferase (GNAT) family
`XP_057796543.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	29	150	1e-11	45.6	Acetyltransferase (GNAT) domain
`XP_057796543.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	58	133	1.1e-12	48.9	Acetyltransferase (GNAT) domain
`XP_057796543.1`	Pfam	`PF08445`	FR47	Family	75	134	8.8e-08	32.7	FR47-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940560.1
ATTGTTAGAACTAAGAGAGAGAGAGAGAGAAACTCTCAATTATACAATGGCAGGCTGCGAAATGGTGGAACTTCACAGAAATTCCAGCAATTGGACGAAAATTGTGGAAGAAATTGTGAGGATAGAGAAAAAGGTGTTCCCGAAGCACGAATCGCTTTCGAAATCGTTCGAAGAAGAGGCGAAAAAGAGGAACGGCGGATTGATCTACTCCCTGATCGGCGGCGAAGTTGCCGGATACGTCATGTATTCCTGGCCATCTT...

CDS

1 records

下载 CDS FASTA

LOC131012578
ATGGCAGGCTGCGAAATGGTGGAACTTCACAGAAATTCCAGCAATTGGACGAAAATTGTGGAAGAAATTGTGAGGATAGAGAAAAAGGTGTTCCCGAAGCACGAATCGCTTTCGAAATCGTTCGAAGAAGAGGCGAAAAAGAGGAACGGCGGATTGATCTACTCCCTGATCGGCGGCGAAGTTGCCGGATACGTCATGTATTCCTGGCCATCTTCGCTCTACGCTTCCATCACAAAACTTGCAGTAAAAGAGAACTGCAG...

Protein

1 records

下载 Protein FASTA

XP_057796543.1
MAGCEMVELHRNSSNWTKIVEEIVRIEKKVFPKHESLSKSFEEEAKKRNGGLIYSLIGGEVAGYVMYSWPSSLYASITKLAVKENCRGQGHGEALLKAAIEKCKTRKIHRVSLHVDPLRTAAMNLYKKLGFEVDSLVESYYSSGRDAYRMYLDLETD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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