当前解析结果
SmilChr02G000170| 统一新 Gene ID | SmilChr02G000170 |
|---|---|
| 名称 | SmilChr02G000170 |
| 描述 | protease Do-like 7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2184253 - 2682787 / - |
| NCBI Gene ID | LOC131012585 |
|---|---|
| GeneID | 131012585 |
| locus_tag | - |
| NCBI Name | LOC131012585 |
| 原始查询 | SmilChr02G000170 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protease Do-like 7 |
| 产物 | protease Do-like 7 |
| Arabidopsis | AT3G03380 (DEG7)DegP protease 7 [Source:NCBI gene (formerly Entrezgene);Acc:821268] identity=67.2; qcov=1.1; evalue=0; confidence=high |
| Rice | Os02g0712000 (OsDegp2)- identity=63.7; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00595 (PDZ); PF12812 (PDZ_1); PF13365 (Trypsin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012585 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057796551.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057796551.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796551.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796551.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2679477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr2:2679547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C80 |
Chr2:2679649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2679699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2679706 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr2:2679706 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D10 |
Chr2:2679738 |
G |
A |
EMS_canonical_SNV | stop_gained | 36 | A1,A13,A22,A23,A7,A9,B10,B112,B128,B129,B135,B138,B28,B36,B37,B38,B39,B4,B48,B56,B57,B64,B80,B81,B93,B96,C1,C31,C33,C58,C60,C64,C66,C74,C80,C81 |
Chr2:2679744 |
AC |
* |
1bp_deletion | CDS_variant | 1 | B69 |
Chr2:2679760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2679800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr2:2680037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2680229 |
TG |
T |
1bp_deletion | frameshift_variant | 21 | B130,B135,B136,B138,B6,B61,B83,B97,B98,C14,C17,C48,C52,C54,C55,C67,C79,C83,C84,C86,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796551.1PF13365
Trypsin_2 46-192 aa
PF00595
PDZ 267-298 aa
PF12812
PDZ_1 337-409 aa
PF12812
PDZ_1 830-905 aa
XP_057796552.1PF13365
Trypsin_2 46-192 aa
PF00595
PDZ 267-298 aa
PF12812
PDZ_1 337-409 aa
PF12812
PDZ_1 830-905 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796551.1 |
Pfam | PF13365 |
Trypsin_2 | Domain | 46 | 192 | 9.5e-24 | 85.5 | Trypsin-like peptidase domain |
XP_057796551.1 |
Pfam | PF00595 |
PDZ | Domain | 267 | 298 | 3.3e-10 | 40.9 | PDZ domain |
XP_057796551.1 |
Pfam | PF12812 |
PDZ_1 | Domain | 337 | 409 | 2.2e-28 | 98.8 | PDZ-like domain |
XP_057796551.1 |
Pfam | PF12812 |
PDZ_1 | Domain | 830 | 905 | 2.2e-28 | 98.8 | PDZ-like domain |
XP_057796552.1 |
Pfam | PF13365 |
Trypsin_2 | Domain | 46 | 192 | 9.5e-24 | 85.5 | Trypsin-like peptidase domain |
XP_057796552.1 |
Pfam | PF00595 |
PDZ | Domain | 267 | 298 | 3.3e-10 | 40.9 | PDZ domain |
XP_057796552.1 |
Pfam | PF12812 |
PDZ_1 | Domain | 337 | 409 | 2.2e-28 | 98.8 | PDZ-like domain |
XP_057796552.1 |
Pfam | PF12812 |
PDZ_1 | Domain | 830 | 905 | 2.2e-28 | 98.8 | PDZ-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。