当前解析结果
SmilChr02G000187| 统一新 Gene ID | SmilChr02G000187 |
|---|---|
| 名称 | SmilChr02G000187 |
| 描述 | O-fucosyltransferase 23-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2347762 - 2349042 / + |
| NCBI Gene ID | LOC131007827 |
|---|---|
| GeneID | 131007827 |
| locus_tag | - |
| NCBI Name | LOC131007827 |
| 原始查询 | SmilChr02G000187 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | O-fucosyltransferase 23-like |
| 产物 | O-fucosyltransferase 23-like |
| Arabidopsis | AT3G05320 (AT3G05320)O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819696] identity=66.3; qcov=1.03; evalue=7.97e-75; confidence=high |
| Rice | Os02g0168500- identity=57.1; qcov=0.994; evalue=2.66e-68; confidence=high |
| GO | GO:0009875 (pollen-pistil interaction) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007827 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057790725.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057790725.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057790725.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790725.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790725.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2347765 |
TGG |
T |
2bp_deletion | frameshift_variant | 1 | B110 |
Chr2:2347765 |
TGG |
T |
2bp_deletion | CDS_variant | 1 | B110 |
Chr2:2347767 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B98,C48,C49 |
Chr2:2347767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B98,C48,C49 |
Chr2:2347792 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B42,B49,B55,B79,B86,C78 |
Chr2:2347821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr2:2347854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C14,C31,C55 |
Chr2:2347874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B63,B83,C70 |
Chr2:2347892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr2:2347922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:2348014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:2348034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B137 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。