Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000203`

染色体: Chr02 坐标: 2622491-2625144 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000203`
名称	SmilChr02G000203
描述	pentatricopeptide repeat-containing protein At1g66345, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	2622491 - 2625144 / `+`

ID 对照

NCBI Gene ID	`LOC131012589`
GeneID	`131012589`
locus_tag	`-`
NCBI Name	`LOC131012589`
原始查询	`SmilChr02G000203`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g66345, mitochondrial
产物	pentatricopeptide repeat-containing protein At1g66345%2C mitochondrial
Arabidopsis	`AT1G66345` (AT1G66345) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842952] identity=40.8; qcov=1.02; evalue=7.01e-139; confidence=medium
Rice	`Os01g0170800` - identity=36.4; qcov=0.651; evalue=1.04e-76; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131012589

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796555.1`
2	Nucleus	细胞核	0.00000	`XP_057796555.1`
3	Chromosome	染色体	0.00000	`XP_057796555.1`
4	Centromere	着丝粒	0.00000	`XP_057796555.1`
5	Chromatin	染色质	0.00000	`XP_057796555.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:2622783`	`G`	`GGA`	2bp_insertion	frameshift_variant	2	A3,B46
`Chr2:2622783`	`G`	`GGA`	2bp_insertion	CDS_variant	2	A3,B46
`Chr2:2622825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B46,C17,C79
`Chr2:2622834`	`A`	`AC`	1bp_insertion	frameshift_variant	3	A2,B102,C86
`Chr2:2622834`	`A`	`AC`	1bp_insertion	CDS_variant	3	A2,B102,C86
`Chr2:2622835`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B18,B19,B75
`Chr2:2622835`	`TC`	`T`	1bp_deletion	CDS_variant	3	B18,B19,B75
`Chr2:2622869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:2622950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C33,C6
`Chr2:2622963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:2622987`	`C`	`CAT`	2bp_insertion	frameshift_variant	145	A1,A11,A13,A15,A16,A20,A22,A23,A3,A4,A5,A6,A7,A9,B1,B10,B103,B104,B105,B108,B109,B111,B112,B115,B118,B119,B12,B123,B125,B126,B128,B129,B13,B130,B135,B136,B138,B139,B14,B140,B16,B17,B21,B24,B28,B3,B32,B33,B34,B35,B36,B37,B38,B39,B4,B42,B43,B44,B45,B46,B48,B5,B51,B54,B56,B57,B6,B61,B64,B65,B68,B72,B76,B78,B80,B81,B83,B86,B89,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C13,C14,C17,C2,C21,C22,C23,C26,C28,C29,C3,C30,C31,C33,C38,C4,C40,C41,C44,C45,C48,C50,C52,C53,C54,C55,C56,C57,C58,C6,C60,C64,C65,C66,C67,C68,C69,C71,C73,C74,C75,C77,C79,C80,C81,C83,C85,C86,C87,D10,D2,D4,D6,D7
`Chr2:2623005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796555.1

519 aa

260

519

PPR_3

PPR_2

PPR

TPR_24

PPR

PPR_3

PPR

PF13812 PPR_3 187-231 aa PF13041 PPR_2 193-241 aa PF01535 PPR 195-223 aa PF23276 TPR_24 200-326 aa PF01535 PPR 231-260 aa PF01535 PPR 302-332 aa PF01535 PPR 340-367 aa PF01535 PPR 375-402 aa PF13812 PPR_3 436-486 aa PF01535 PPR 443-470 aa PF01535 PPR 479-503 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796555.1`	Pfam	`PF13812`	PPR_3	Repeat	187	231	3.4e-17	63.0	Pentatricopeptide repeat domain
`XP_057796555.1`	Pfam	`PF13041`	PPR_2	Repeat	193	241	3.8e-38	130.1	PPR repeat family
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	195	223	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF23276`	TPR_24	Repeat	200	326	7.8e-17	62.2	Pentatricopeptide repeat-containing protein
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	231	260	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	302	332	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	340	367	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	375	402	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF13812`	PPR_3	Repeat	436	486	3.4e-17	63.0	Pentatricopeptide repeat domain
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	443	470	9.4e-29	98.3	PPR repeat
`XP_057796555.1`	Pfam	`PF01535`	PPR	Repeat	479	503	9.4e-29	98.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940572.1
TTCATAATTCATTCCCCTCAAAAACAGAGGAAAACTTCAAATATAAATTTCTGTCGCCGTTCAACACCCAATTCAAATCCCTCTCATCCATTTCATCAAACAGCTTGCGGGCATCCCACATTCACAATACAGCTCAAGAATATTGTTCGAGATCAAAACCCACAGCTGCAGAATCCCGCCCCTTTTCTCACTGGTGGCTGGAAAATGGCATTCCCGAAAAACTTCAGCTAACGTTCCATCTTCTAATTATACTATAGATG...

CDS

1 records

下载 CDS FASTA

LOC131012589
ATGGCTAATTTGATTCGAACTTTTTCACGCAAAAAGCCAATTCAGTTCTGCATCTCGCTTTCGTTTCCCCCTAAACTCCACACATTATCGCAGCCCAAACCCAGTGACAACAATGGGATCACCTCCATAATCGATTCCTTACACAGAGGCGAAAGCTGGAAAACCCTCTCACAAAAATTCGGTTCATTCAAATTCACAGACACCTTAGTTGCAAACATTCTGTTGCAGCTCAAGGAACCCATTGATTCAAGAAAAGCCTT...

Protein

1 records

下载 Protein FASTA

XP_057796555.1
MANLIRTFSRKKPIQFCISLSFPPKLHTLSQPKPSDNNGITSIIDSLHRGESWKTLSQKFGSFKFTDTLVANILLQLKEPIDSRKALKFFHWTAKEVNLEHGLSNYCLIIHILVKGGLIKDAKAMFESILGKHSSEGNSHIFPVLDSLMESYGIVDSVPLVFDLFVQTCGKLRIVDDILDACELLFDNGFVLSVISFNTLLHVLQKRGNVELVWGVYELMIKRRKCPNEITVRIMVSTLCKEGKLERFLGIVDRMQGKRC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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