Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000207`

染色体: Chr02 坐标: 2733546-2736218 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000207`
名称	SmilChr02G000207
描述	putative cyclin-D6-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	2733546 - 2736218 / `+`

ID 对照

NCBI Gene ID	`LOC131012612`
GeneID	`131012612`
locus_tag	`-`
NCBI Name	`LOC131012612`
原始查询	`SmilChr02G000207`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative cyclin-D6-1
产物	putative cyclin-D6-1
Arabidopsis	`AT4G03270` (CYCD6;1) Cyclin D6;1 [Source:NCBI gene (formerly Entrezgene);Acc:828000] identity=42; qcov=1.01; evalue=1.12e-64; confidence=medium
Rice	`Os07g0556000` (CycD6) - identity=34.3; qcov=1.03; evalue=3.81e-39; confidence=low
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131012612

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796578.1`
2	Chromosome	染色体	0.00000	`XP_057796578.1`
3	Centromere	着丝粒	0.00000	`XP_057796578.1`
4	Chromatin	染色质	0.00000	`XP_057796578.1`
5	Telomere	端粒	0.00000	`XP_057796578.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:2733664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,D4
`Chr2:2733779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr2:2733990`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B52
`Chr2:2733990`	`G`	`GA`	1bp_insertion	CDS_variant	1	B52
`Chr2:2734243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B93,C39
`Chr2:2734288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B93,C39
`Chr2:2735601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B37,B6,C63
`Chr2:2735627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B53,C18,C19,C34
`Chr2:2735631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B134,B50
`Chr2:2735870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,C13
`Chr2:2735874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C13
`Chr2:2735875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B53,C18,C19,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796578.1

302 aa

151

302

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 21-142 aa PF02984 Cyclin_C 144-239 aa

XP_057796579.1

301 aa

150

301

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 21-141 aa PF02984 Cyclin_C 143-238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796578.1`	Pfam	`PF00134`	Cyclin_N	Domain	21	142	4.9e-15	56.1	Cyclin, N-terminal domain
`XP_057796578.1`	Pfam	`PF02984`	Cyclin_C	Domain	144	239	7.7e-06	26.6	Cyclin, C-terminal domain
`XP_057796579.1`	Pfam	`PF00134`	Cyclin_N	Domain	21	141	7.1e-15	55.6	Cyclin, N-terminal domain
`XP_057796579.1`	Pfam	`PF02984`	Cyclin_C	Domain	143	238	7.7e-06	26.6	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940595.1
AGTGTGAAGTGAAAGGTGAAAAGAAAAAAAGACCCTGCAAGAATTATCCATCGATGGAGTTTGATTTTGATCTCGAAAATCCATTTTCAACTTCCACTCTCAACTTCCCTTTACTCTTCCACATAGAGACTCATCACACGCCCTCCAAATCTTACCTTCAAACAACAAAATCCAATCCCGCAACTCGCGCCCACATTGTCTCTTTGATCCTATGTTTTTGTCGGAATTTCGATGCCTTTTCATCGTATCTTGCTATTAAT...

XM_057940596.1
GTGTGAAGTGAAAGGTGAAAAGAAAAAAAGACCCTGCAAGAATTATCCATCGATGGAGTTTGATTTTGATCTCGAAAATCCATTTTCAACTTCCACTCTCAACTTCCCTTTACTCTTCCACATAGAGACTCATCACACGCCCTCCAAATCTTACCTTCAAACAACAAAATCCAATCCCGCAACTCGCGCCCACATTGTCTCTTTGATCCTATGTTTTTGTCGGAATTTCGATGCCTTTTCATCGTATCTTGCTATTAATT...

CDS

2 records

下载 CDS FASTA

LOC131012612
ATGGAGTTTGATTTTGATCTCGAAAATCCATTTTCAACTTCCACTCTCAACTTCCCTTTACTCTTCCACATAGAGACTCATCACACGCCCTCCAAATCTTACCTTCAAACAACAAAATCCAATCCCGCAACTCGCGCCCACATTGTCTCTTTGATCCTATGTTTTTGTCGGAATTTCGATGCCTTTTCATCGTATCTTGCTATTAATTACATGGATCGCTTCCTCTCCGCCGTTTCCATCCCCGAGGAGAGGCCGTGGAT...

Protein

2 records

下载 Protein FASTA

XP_057796578.1
MEFDFDLENPFSTSTLNFPLLFHIETHHTPSKSYLQTTKSNPATRAHIVSLILCFCRNFDAFSSYLAINYMDRFLSAVSIPEERPWILRVTAVSCVSLALKMRKIEFSASDFQQDDGGMILDSVTIERAEMLILGALKWRMRSVNPFSFINFFIPFFGIEDETSIHRLKDRATENILRAQNDIKLLEFNPSIISAAALLSVANELFPSQLPRFSDSISCCEYVSKVELFNCYYLMQERRDPSASDASSNSSTPYNVLDLQ...

XP_057796579.1
MEFDFDLENPFSTSTLNFPLLFHIETHHTPSKSYLQTTKSNPATRAHIVSLILCFCRNFDAFSSYLAINYMDRFLSAVSIPEERPWILRVTAVSCVSLALKMRKIEFSASDFQDDGGMILDSVTIERAEMLILGALKWRMRSVNPFSFINFFIPFFGIEDETSIHRLKDRATENILRAQNDIKLLEFNPSIISAAALLSVANELFPSQLPRFSDSISCCEYVSKVELFNCYYLMQERRDPSASDASSNSSTPYNVLDLQC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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