当前解析结果
SmilChr02G000208| 统一新 Gene ID | SmilChr02G000208 |
|---|---|
| 名称 | SmilChr02G000208 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2741274 - 2744026 / + |
| NCBI Gene ID | LOC131012613 |
|---|---|
| GeneID | 131012613 |
| locus_tag | - |
| NCBI Name | LOC131012613 |
| 原始查询 | SmilChr02G000208 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| Arabidopsis | AT2G19130 (AT2G19130)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816430] identity=55.2; qcov=0.99; evalue=0; confidence=high |
| Rice | Os07g0553633- identity=49.4; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012613 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796580.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796580.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796580.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796580.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796580.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2741517 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2741599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B131,B9 |
Chr2:2741667 |
C |
CA |
1bp_insertion | frameshift_variant | 26 | A23,A6,B105,B111,B117,B119,B122,B128,B2,B36,B51,B72,B73,B77,B88,B90,B92,C15,C29,C33,C36,C56,C64,C66,C9,D8 |
Chr2:2741799 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | B11,B2,B30,B58,B79,B82,B84,C15,C26 |
Chr2:2741862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:2741939 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B102 |
Chr2:2741939 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B102 |
Chr2:2742156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A5,B15,B9,C16 |
Chr2:2742233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,C33,C80 |
Chr2:2742374 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | C52,C79 |
Chr2:2742374 |
TC |
T |
1bp_deletion | CDS_variant | 2 | C52,C79 |
Chr2:2742508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B59,B65,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796580.1PF01453
B_lectin 76-186 aa
PF00954
S_locus_glycop 218-325 aa
PF08276
PAN_2 351-409 aa
PF07714
PK_Tyr_Ser-Thr 497-764 aa
PF00069
Pkinase 498-763 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796580.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 186 | 9.5e-31 | 107.1 | D-mannose binding lectin |
XP_057796580.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 218 | 325 | 9.7e-26 | 91.2 | S-locus glycoprotein domain |
XP_057796580.1 |
Pfam | PF08276 |
PAN_2 | Domain | 351 | 409 | 1.7e-11 | 44.8 | PAN-like domain |
XP_057796580.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 497 | 764 | 4.4e-42 | 144.9 | Protein tyrosine and serine/threonine kinase |
XP_057796580.1 |
Pfam | PF00069 |
Pkinase | Domain | 498 | 763 | 3.9e-47 | 161.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。