当前解析结果
SmilChr02G000209| 统一新 Gene ID | SmilChr02G000209 |
|---|---|
| 名称 | SmilChr02G000209 |
| 描述 | uncharacterized SmilChr02G000209 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2743985 - 2745712 / - |
| NCBI Gene ID | LOC131012616 |
|---|---|
| GeneID | 131012616 |
| locus_tag | - |
| NCBI Name | LOC131012616 |
| 原始查询 | SmilChr02G000209 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631]; symbol=AT1G27410; hit=AT1G27410; species=arabidopsis; confidence=medium |
| 产物 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631]; symbol=AT1G27410; hit=AT1G27410; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G27410 (AT1G27410)DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631] identity=43.2; qcov=0.941; evalue=8.27e-39; confidence=medium |
| Rice | -- |
| GO | GO:0003684 (damaged DNA binding); GO:0006303 (double-strand break repair via nonhomologous end joining); GO:0031848 (protection from non-homologous end joining at telomere); GO:0035312 (5'-3' DNA exonuclease activity); GO:0036297 (interstrand cross-link repair) |
| KEGG | - |
| Pfam | PF07522 (DRMBL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012616 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796583.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057796583.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057796583.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057796583.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057796583.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2744223 |
GT |
G |
1bp_deletion | frameshift_variant | 7 | A16,A5,B15,B9,C1,C16,D3 |
Chr2:2744244 |
C |
CT |
1bp_insertion | frameshift_variant | 148 | A1,A10,A13,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A5,A9,B1,B100,B101,B102,B106,B107,B109,B11,B110,B112,B113,B114,B115,B117,B12,B120,B125,B128,B13,B131,B134,B137,B138,B139,B15,B18,B19,B2,B20,B21,B22,B24,B25,B26,B29,B30,B31,B32,B33,B38,B39,B4,B40,B41,B44,B45,B46,B47,B48,B49,B50,B51,B52,B55,B58,B60,B62,B63,B66,B67,B69,B7,B70,B72,B74,B78,B79,B80,B81,B82,B84,B85,B87,B9,B91,B94,B95,B99,C1,C12,C14,C15,C16,C17,C19,C20,C24,C25,C26,C27,C28,C3,C30,C31,C35,C36,C39,C4,C42,C45,C46,C47,C49,C5,C50,C53,C57,C58,C59,C60,C62,C63,C65,C7,C70,C71,C72,C76,C78,C79,C8,C82,C84,C85,C86,C87,D11,D2,D3,D4,D6,D7,D9 |
Chr2:2744383 |
CCG |
C |
2bp_deletion | frameshift_variant | 53 | A11,A15,A20,A22,A4,A8,B1,B105,B108,B115,B119,B12,B123,B125,B136,B14,B140,B24,B30,B33,B35,B42,B43,B56,B68,B7,B76,B78,B8,B90,B92,B96,C10,C2,C21,C23,C24,C28,C33,C38,C39,C40,C41,C44,C50,C57,C73,C77,C80,C81,C85,D10,D11 |
Chr2:2744392 |
C |
CCT |
2bp_insertion | frameshift_variant | 53 | A11,A15,A20,A22,A4,A8,B1,B105,B108,B115,B119,B12,B123,B125,B136,B14,B140,B24,B30,B33,B35,B42,B43,B56,B68,B7,B76,B78,B8,B90,B92,B96,C10,C2,C21,C23,C24,C28,C33,C38,C39,C40,C41,C44,C50,C57,C73,C77,C80,C81,C85,D10,D11 |
Chr2:2744487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:2744562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:2744630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B40,B76,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796583.1PF07522
DRMBL 8-119 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796583.1 |
Pfam | PF07522 |
DRMBL | Domain | 8 | 119 | 8.4e-11 | 42.7 | DNA repair metallo-beta-lactamase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。