当前解析结果
SmilChr02G000212| 统一新 Gene ID | SmilChr02G000212 |
|---|---|
| 名称 | SmilChr02G000212 |
| 描述 | uncharacterized SmilChr02G000212 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2754567 - 2760417 / - |
| NCBI Gene ID | LOC131012617 |
|---|---|
| GeneID | 131012617 |
| locus_tag | - |
| NCBI Name | LOC131012617 |
| 原始查询 | SmilChr02G000212 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828003]; symbol=AT4G03260; hit=AT4G03260; species=arabidopsis; confidence=medium |
| 产物 | Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828003]; symbol=AT4G03260; hit=AT4G03260; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G03260 (AT4G03260)Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828003] identity=44.3; qcov=1.06; evalue=6.64e-156; confidence=medium |
| Rice | Os07g0106100 (B1317D11.118)- identity=55.7; qcov=0.49; evalue=1.85e-93; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0019901 (protein kinase binding) |
| KEGG | - |
| Pfam | PF12799 (LRR_4); PF13855 (LRR_8); PF14580 (LRR_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796584.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796584.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796584.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796584.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2754841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,B66 |
Chr2:2754873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,C13,D7 |
Chr2:2754910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C80 |
Chr2:2755005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:2755245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr2:2755267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,B66 |
Chr2:2757267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr2:2757281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B6,C67 |
Chr2:2757562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:2757722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr2:2757998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:2758410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B53,B59,B65,B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796584.1PF13855
LRR_8 416-471 aa
PF14580
LRR_9 420-516 aa
PF12799
LRR_4 439-471 aa
PF13855
LRR_8 460-516 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796584.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 416 | 471 | 1.2e-15 | 57.8 | Leucine rich repeat |
XP_057796584.1 |
Pfam | PF14580 |
LRR_9 | Repeat | 420 | 516 | 8.8e-10 | 39.1 | Leucine-rich repeat |
XP_057796584.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 439 | 471 | 5.2e-16 | 59.0 | Leucine Rich repeats (2 copies) |
XP_057796584.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 460 | 516 | 1.2e-15 | 57.8 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。