Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000216`

染色体: Chr02 坐标: 2822211-2825723 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000216`
名称	SmilChr02G000216
描述	protein FAR1-RELATED SEQUENCE 9
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	2822211 - 2825723 / `-`

ID 对照

NCBI Gene ID	`LOC131012620`
GeneID	`131012620`
locus_tag	`-`
NCBI Name	`LOC131012620`
原始查询	`SmilChr02G000216`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 9
产物	protein FAR1-RELATED SEQUENCE 9
Arabidopsis	`AT4G38170` (FRS9) FAR1-related sequence 9 [Source:NCBI gene (formerly Entrezgene);Acc:829973] identity=56.7; qcov=0.976; evalue=0; confidence=high
Rice	`Os03g0655600` - identity=45.4; qcov=0.851; evalue=7.74e-136; confidence=high
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131012620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796587.1`
2	Chromosome	染色体	0.00000	`XP_057796587.1`
3	Centromere	着丝粒	0.00000	`XP_057796587.1`
4	Chromatin	染色质	0.00000	`XP_057796587.1`
5	Telomere	端粒	0.00000	`XP_057796587.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:2822748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:2822781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B120,B15,B78,C63
`Chr2:2823651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:2823700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:2823741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B53,B59,B65,B71
`Chr2:2823789`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:2824113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:2824146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:2824224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,C30,C82,D9
`Chr2:2824294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,C30,C82,D9
`Chr2:2824333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C4,C7,C70,C82
`Chr2:2824395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796587.1

551 aa

276

551

MULE

SWIM

PF10551 MULE 64-155 aa PF04434 SWIM 352-380 aa

XP_057796588.1

551 aa

276

551

MULE

SWIM

PF10551 MULE 64-155 aa PF04434 SWIM 352-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796587.1`	Pfam	`PF10551`	MULE	Domain	64	155	1.1e-21	77.7	MULE transposase domain
`XP_057796587.1`	Pfam	`PF04434`	SWIM	Domain	352	380	1.1e-09	38.3	SWIM zinc finger
`XP_057796588.1`	Pfam	`PF10551`	MULE	Domain	64	155	1.1e-21	77.7	MULE transposase domain
`XP_057796588.1`	Pfam	`PF04434`	SWIM	Domain	352	380	1.1e-09	38.3	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940605.1
GTTTTTGCATTTATTATCATACAATATTTCTTCCCAATTATTCGTATTATATCTACCGATTTAGCAATTCAGAAATTGCAATTTCTCACTCAGTGAAAGAATTGAAGAATTCCTCTTACTCACACCTCCGACTTCGGCGCCAATTTTCCATAAATTGGGGATTTATTTACAAATGAATAATAGCAGCAATAGGCAGAGAAACCTGGGCCCCGGGGTTCAATATTTACTGGATTATCTAAAAAGAATGCAGTCTGAGAATC...

XM_057940604.1
GTTTTTGCATTTATTATCATACAATATTTCTTCCCAATTATTCGTATTATATCTACCGATTTAGCAATTCAGAAATTGCAATTTCTCACTCAGTGAAAGAATTGAAGAATTCCTCTTACTCACACCTCCGACTTCGGCGCCAATTTTCGTAAATTCTCGTCCCAGTATTCAAAACCATCATAAATTGGGGATTTATTTACAAATGAATAATAGCAGCAATAGGCAGAGAAACCTGGGCCCCGGGGTTCAATATTTACTGG...

CDS

2 records

下载 CDS FASTA

LOC131012620
ATGAATAATAGCAGCAATAGGCAGAGAAACCTGGGCCCCGGGGTTCAATATTTACTGGATTATCTAAAAAGAATGCAGTCTGAGAATCCTGGTTTTTTCTATGCGTTTGAGGGTGACAGTGAGCTGTGTGGGAATGTGTTTTGGGCCGATGCTGCTTCTCGGTCGAACTATAGCTATTTCGGTGACACTGTTAGGGTTGACACGTCGTATAGGTCCAGCCGGTCTAAGATACCATTCGTCACCTTCACCGGTGTAAACCA...

Protein

2 records

下载 Protein FASTA

XP_057796587.1
MNNSSNRQRNLGPGVQYLLDYLKRMQSENPGFFYAFEGDSELCGNVFWADAASRSNYSYFGDTVRVDTSYRSSRSKIPFVTFTGVNHHGDPVLFGCALLLNESDASFVWLLQTWLRAMSGRVPVSVTSDPDRLIQMAVAQVLPEARNRFCRWSVLRQTQEKLGNVCQVNPSFDFELRKCVNEADTVEEFESCWGSLVSRYYLMNNEWLQSLYNIRDQWVPVYLRDVFFGELSAVDCSDASSFFSDGFLSSSPTIQLLIKQ...

XP_057796588.1
MNNSSNRQRNLGPGVQYLLDYLKRMQSENPGFFYAFEGDSELCGNVFWADAASRSNYSYFGDTVRVDTSYRSSRSKIPFVTFTGVNHHGDPVLFGCALLLNESDASFVWLLQTWLRAMSGRVPVSVTSDPDRLIQMAVAQVLPEARNRFCRWSVLRQTQEKLGNVCQVNPSFDFELRKCVNEADTVEEFESCWGSLVSRYYLMNNEWLQSLYNIRDQWVPVYLRDVFFGELSAVDCSDASSFFSDGFLSSSPTIQLLIKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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