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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000220

染色体: Chr02 坐标: 2871517-2874294 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000220
名称SmilChr02G000220
描述pentatricopeptide repeat-containing protein At1g12620-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向2871517 - 2874294 / -

ID 对照

NCBI Gene IDLOC131012627
GeneID131012627
locus_tag-
NCBI NameLOC131012627
原始查询SmilChr02G000220

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12620-like
产物pentatricopeptide repeat-containing protein At1g12620-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=33; qcov=0.888; evalue=3e-114; confidence=low
RiceOs07g0101200
-
identity=29.7; qcov=0.886; evalue=4.06e-93; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012627

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796596.1
2 Chloroplast 叶绿体 0.20000 XP_057796596.1
3 Nucleus 细胞核 0.00000 XP_057796596.1
4 Chromosome 染色体 0.00000 XP_057796596.1
5 Centromere 着丝粒 0.00000 XP_057796596.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:2872120 G A EMS_canonical_SNV CDS_variant 3 B29,C13,C30
Chr2:2872144 C T EMS_canonical_SNV CDS_variant 1 B131
Chr2:2872174 T TGC 2bp_insertion frameshift_variant 1 B40
Chr2:2872174 T TGC 2bp_insertion CDS_variant 1 B40
Chr2:2872180 C T EMS_canonical_SNV CDS_variant 2 B85,C30
Chr2:2872217 AC A 1bp_deletion frameshift_variant 4 B103,C32,C42,C68
Chr2:2872217 AC A 1bp_deletion CDS_variant 4 B103,C32,C42,C68
Chr2:2872265 AC A 1bp_deletion frameshift_variant 1 C48
Chr2:2872265 AC A 1bp_deletion CDS_variant 1 C48
Chr2:2872285 C T EMS_canonical_SNV CDS_variant 5 B123,C41,C52,C69,C80
Chr2:2872286 G A EMS_canonical_SNV CDS_variant 2 B64,C38
Chr2:2872288 C T EMS_canonical_SNV CDS_variant 3 A16,B118,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796596.1
669 aa
N
1
334
669
PPR_2
PPR
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13041 PPR_2 75-123 aa PF01535 PPR 80-108 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF01535 PPR 191-213 aa PF13041 PPR_2 191-230 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 214-245 aa PF01535 PPR 220-249 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-282 aa PF12854 PPR_1 284-315 aa PF01535 PPR 289-319 aa PF13041 PPR_2 294-332 aa PF23276 TPR_24 309-419 aa PF13812 PPR_3 310-366 aa PF12854 PPR_1 317-346 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF12854 PPR_1 352-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 363-404 aa PF13812 PPR_3 380-438 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-424 aa PF13812 PPR_3 415-469 aa PF12854 PPR_1 423-453 aa PF13041 PPR_2 426-473 aa PF01535 PPR 429-455 aa PF13812 PPR_3 451-506 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF13812 PPR_3 484-541 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-528 aa PF13041 PPR_2 505-545 aa PF13812 PPR_3 521-576 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-578 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa PF01535 PPR 604-634 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 75 123 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 80 108 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 141 172 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 148 175 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 191 213 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 191 230 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 207 265 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 214 245 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 220 249 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 239 296 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 247 279 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 251 299 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 254 282 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 284 315 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 289 319 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 294 332 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF23276 TPR_24 Repeat 309 419 2.8e-33 115.4 Pentatricopeptide repeat-containing protein
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 310 366 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 317 346 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 321 370 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 325 354 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 352 385 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 360 389 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 363 404 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 380 438 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 387 419 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 391 440 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 394 424 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 415 469 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 423 453 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 426 473 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 429 455 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 451 506 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 462 510 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 464 492 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 484 541 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 493 525 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 499 528 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 505 545 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 521 576 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF12854 PPR_1 Repeat 527 557 1.5e-132 431.6 PPR repeat
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 531 578 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 534 564 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF13812 PPR_3 Repeat 555 610 2e-75 249.5 Pentatricopeptide repeat domain
XP_057796596.1 Pfam PF13041 PPR_2 Repeat 566 610 8.2e-157 510.0 PPR repeat family
XP_057796596.1 Pfam PF01535 PPR Repeat 570 599 1.1e-93 301.8 PPR repeat
XP_057796596.1 Pfam PF01535 PPR Repeat 604 634 1.1e-93 301.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940613.1
ATATATATATATATATATAAGTGACACCCAATGAAATGGTGCCACATGGAAGTCACTCTTGTATGCCTCAAAGGCGGTTAGCCAACCAATGTCATGACTTTTTGATGATTTCTCATTTATTTTATTAATTAAGCTTTTTGTCTTTTATGGTGACATTATAGAAAAAGTCACCAATGGCAGTGAAACTCTTCTTTCTCACTTTTGTACCTTACTTCGGATCTAATCACTCTTTCTTCACATTAAATCTCACCGCCGATTAA...

CDS

1 records

下载 CDS FASTA
LOC131012627
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGACGATTTCTCAATCGATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCATAAAATAAAGAGTATGCGTCCAGAGCCTTCTGTTCGCCTGTATAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796596.1
MMARRAVVSAIDLIHRRRFLNRWSQHQSGILSPLFSLFSSEAFQPKRSRIDFSCVKEVDDVIELFHKIKSMRPEPSVRLYNKLMSVSVTIEQYSFALDVFGEMLRMGVPVNDYTMSIAVNCCCLLKDINFGFCIMGFFLKRGHEPDVVTFGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPSDVMILHVTDGLCKAGQVIEAHDWLHRLESSGWSPNVYAYSALIDGFCNGGMVDNAFKVLTKMVGKGILPDIVAYNTMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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