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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000229

染色体: Chr02 坐标: 2971538-2973799 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000229
名称SmilChr02G000229
描述pentatricopeptide repeat-containing protein At1g12620-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向2971538 - 2973799 / +

ID 对照

NCBI Gene IDLOC131012637
GeneID131012637
locus_tag-
NCBI NameLOC131012637
原始查询SmilChr02G000229

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12620-like
产物pentatricopeptide repeat-containing protein At1g12620-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=34.3; qcov=0.888; evalue=9.61e-118; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=29.8; qcov=0.96; evalue=3.79e-95; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012637

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796604.1
2 Chloroplast 叶绿体 0.20000 XP_057796604.1
3 Nucleus 细胞核 0.00000 XP_057796604.1
4 Chromosome 染色体 0.00000 XP_057796604.1
5 Centromere 着丝粒 0.00000 XP_057796604.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:2971672 C T EMS_canonical_SNV CDS_variant 1 B115
Chr2:2971692 TTC T 2bp_deletion frameshift_variant 2 B12,B31
Chr2:2971692 TTC T 2bp_deletion CDS_variant 2 B12,B31
Chr2:2971694 C T EMS_canonical_SNV CDS_variant 2 B47,B64
Chr2:2971710 G A EMS_canonical_SNV CDS_variant 2 B115,B91
Chr2:2971745 C T EMS_canonical_SNV CDS_variant 1 B115
Chr2:2971764 G A EMS_canonical_SNV CDS_variant 2 B123,C32
Chr2:2971886 G A EMS_canonical_SNV CDS_variant 3 B110,B17,B28
Chr2:2971914 C T EMS_canonical_SNV CDS_variant 1 D8
Chr2:2971930 C T EMS_canonical_SNV CDS_variant 1 B59
Chr2:2971936 G A EMS_canonical_SNV CDS_variant 5 B50,C38,C70,C82,D10
Chr2:2972181 C T EMS_canonical_SNV stop_gained 25 A3,A5,A6,B105,B115,B131,B25,B3,B31,B46,B63,B7,B88,B98,C16,C30,C42,C5,C57,C60,C62,C78,C82,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796604.1
669 aa
N
1
334
669
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
C
PF13041 PPR_2 75-123 aa PF01535 PPR 80-108 aa PF13812 PPR_3 99-155 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF23276 TPR_24 186-255 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF17177 PPR_long 203-295 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 214-245 aa PF01535 PPR 219-249 aa PF13041 PPR_2 223-265 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-283 aa PF13812 PPR_3 276-333 aa PF12854 PPR_1 283-315 aa PF01535 PPR 289-319 aa PF13041 PPR_2 294-335 aa PF23276 TPR_24 309-418 aa PF13812 PPR_3 310-366 aa PF12854 PPR_1 317-346 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-402 aa PF12854 PPR_1 352-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 363-404 aa PF13812 PPR_3 380-438 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 393-440 aa PF01535 PPR 394-424 aa PF12854 PPR_1 422-454 aa PF01535 PPR 429-458 aa PF13041 PPR_2 433-473 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF17177 PPR_long 478-609 aa PF13812 PPR_3 484-541 aa PF23276 TPR_24 489-579 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-528 aa PF13041 PPR_2 505-545 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-568 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 75 123 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 80 108 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 99 155 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 141 172 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 148 175 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF23276 TPR_24 Repeat 186 255 1.9e-35 122.4 Pentatricopeptide repeat-containing protein
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 188 230 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 189 213 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF17177 PPR_long Repeat 203 295 4.1e-33 115.3 Pentacotripeptide-repeat region of PRORP
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 207 265 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 214 245 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 219 249 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 223 265 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 239 296 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 247 279 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 251 299 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 254 283 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 276 333 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 283 315 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 289 319 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 294 335 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF23276 TPR_24 Repeat 309 418 1.9e-35 122.4 Pentatricopeptide repeat-containing protein
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 310 366 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 317 346 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 321 370 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 325 354 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 345 402 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 352 385 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 360 389 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 363 404 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 380 438 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 387 419 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 393 440 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 394 424 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 422 454 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 429 458 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 433 473 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 462 510 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 464 492 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF17177 PPR_long Repeat 478 609 4.1e-33 115.3 Pentacotripeptide-repeat region of PRORP
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 484 541 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF23276 TPR_24 Repeat 489 579 1.9e-35 122.4 Pentatricopeptide repeat-containing protein
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 493 525 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF01535 PPR Repeat 499 528 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 505 545 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF12854 PPR_1 Repeat 527 557 1.3e-133 435.0 PPR repeat
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 531 568 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 534 564 1.3e-100 323.5 PPR repeat
XP_057796604.1 Pfam PF13812 PPR_3 Repeat 555 610 1.7e-74 246.5 Pentatricopeptide repeat domain
XP_057796604.1 Pfam PF13041 PPR_2 Repeat 566 610 2.3e-163 531.0 PPR repeat family
XP_057796604.1 Pfam PF01535 PPR Repeat 570 599 1.3e-100 323.5 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940621.1
ACTTCAGATCTAATCTCTCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCACAGCATCAATCGGGTATTCTCTCTCCTATGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTCAATTGTTTCAAAAAATAAAGA...

CDS

1 records

下载 CDS FASTA
LOC131012637
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCACAGCATCAATCGGGTATTCTCTCTCCTATGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTCAATTGTTTCAAAAAATAAAGAGTATGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796604.1
MMARRAVVSAIDLIHRRGFLNRWSQHQSGILSPMFSLFSSEAFQPKRSRIDFSCVKEVDDVIQLFQKIKSMRQEPSVLLYNKLMSVSVTIEQYSFALDVFDEMLRMGVPVNNYTMSIAVNCCCLLKDIYSAFSIMGFFLKRGHEPNVVTFSTLIKGLFLVNKEAEAVKLFEKILDLKLCEPDGIMILHVIDGLCKNGQVIEAHDWLHRLESSGWSPNHYTYSALIDGFCKGGMVDNAFKVLTKMVGKGILPNVVTYSSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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