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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000246

染色体: Chr02 坐标: 3176068-3179826 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000246
名称SmilChr02G000246
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3176068 - 3179826 / +

ID 对照

NCBI Gene IDLOC131012650
GeneID131012650
locus_tag-
NCBI NameLOC131012650
原始查询SmilChr02G000246

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=32.7; qcov=0.888; evalue=6.93e-114; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.4; qcov=0.895; evalue=4.5e-98; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012650

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796615.1
2 Chloroplast 叶绿体 0.20000 XP_057796615.1
3 Nucleus 细胞核 0.00000 XP_057796615.1
4 Chromosome 染色体 0.00000 XP_057796615.1
5 Centromere 着丝粒 0.00000 XP_057796615.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3176139 G A EMS_canonical_SNV CDS_variant 1 C69
Chr2:3176178 C T EMS_canonical_SNV CDS_variant 3 B100,B137,C29
Chr2:3176369 G A EMS_canonical_SNV CDS_variant 2 B105,B136
Chr2:3176370 C T EMS_canonical_SNV CDS_variant 2 B105,B136
Chr2:3176414 G A EMS_canonical_SNV CDS_variant 3 B136,B42,B71
Chr2:3176494 C T EMS_canonical_SNV CDS_variant 1 C25
Chr2:3176631 C T EMS_canonical_SNV CDS_variant 3 B42,C86,D7
Chr2:3176711 G A EMS_canonical_SNV CDS_variant 1 D7
Chr2:3176726 C T EMS_canonical_SNV CDS_variant 1 D7
Chr2:3176856 C T EMS_canonical_SNV CDS_variant 1 B26
Chr2:3176874 G A EMS_canonical_SNV CDS_variant 3 C13,C6,D4
Chr2:3176907 G A EMS_canonical_SNV CDS_variant 1 B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796615.1
676 aa
N
1
338
676
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13041 PPR_2 75-123 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF13812 PPR_3 209-265 aa PF12854 PPR_1 215-245 aa PF13041 PPR_2 216-265 aa PF01535 PPR 220-249 aa PF17177 PPR_long 234-340 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-283 aa PF13812 PPR_3 276-333 aa PF12854 PPR_1 283-315 aa PF01535 PPR 289-319 aa PF13041 PPR_2 293-332 aa PF23276 TPR_24 306-419 aa PF12854 PPR_1 317-345 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-401 aa PF12854 PPR_1 352-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 363-404 aa PF13812 PPR_3 380-436 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-424 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 422-453 aa PF01535 PPR 429-455 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF17177 PPR_long 477-584 aa PF13812 PPR_3 484-542 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-529 aa PF13041 PPR_2 508-545 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-579 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa PF01535 PPR 604-634 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 75 123 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 141 172 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 148 175 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 188 230 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 189 213 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 209 265 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 215 245 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 216 265 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 220 249 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF17177 PPR_long Repeat 234 340 4.4e-35 121.7 Pentacotripeptide-repeat region of PRORP
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 247 279 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 251 299 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 254 283 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 276 333 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 283 315 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 289 319 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 293 332 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF23276 TPR_24 Repeat 306 419 3.9e-35 121.4 Pentatricopeptide repeat-containing protein
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 317 345 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 321 370 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 325 354 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 345 401 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 352 385 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 360 389 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 363 404 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 380 436 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 387 419 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 391 440 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 394 424 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 415 470 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 422 453 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 429 455 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 462 510 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 464 492 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF17177 PPR_long Repeat 477 584 4.4e-35 121.7 Pentacotripeptide-repeat region of PRORP
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 484 542 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 493 525 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 499 529 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 508 545 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF12854 PPR_1 Repeat 527 557 4.3e-134 436.6 PPR repeat
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 531 579 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 534 564 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF13812 PPR_3 Repeat 555 610 4.7e-71 235.5 Pentatricopeptide repeat domain
XP_057796615.1 Pfam PF13041 PPR_2 Repeat 566 610 2e-157 512.0 PPR repeat family
XP_057796615.1 Pfam PF01535 PPR Repeat 570 599 2.8e-99 319.4 PPR repeat
XP_057796615.1 Pfam PF01535 PPR Repeat 604 634 2.8e-99 319.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009097402.1
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATGAAAGAGGATTTGTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGCTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTTTGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...
XM_057940632.1
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATGAAAGAGGATTTGTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGCTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTTTGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...

CDS

1 records

下载 CDS FASTA
LOC131012650
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATGAAAGAGGATTTGTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGCTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTTTGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796615.1
MMARRAVVSAIDLIHERGFVNRWSQHKSGILSPLFSLFSSEAFQPKRSRIDFSCVKEVDDVIELFQKIKSLRQEPSVLLYNKLMSVSVTIEQYYIALDVFGEMLRMGVPVNDYTMSIAVNCCCLLKDIYSAFSVMGFFLKRGHEPDVVTFGTLIKGLFLVNKKAEAVKLFEKILDLKLCEPSNVMILHVIDGMCKTGQVIEAHDWLHRLESIGWSPNVKAYSALIDGFCKGGMVNNAFKVLTKMVGKGVLPNVVTYSSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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