Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000259`

染色体: Chr02 坐标: 3316417-3319774 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000259`
名称	SmilChr02G000259
描述	uncharacterized SmilChr02G000259
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	3316417 - 3319774 / `+`

ID 对照

NCBI Gene ID	`LOC131012662`
GeneID	`131012662`
locus_tag	`-`
NCBI Name	`LOC131012662`
原始查询	`SmilChr02G000259`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high
产物	TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027]; symbol=AT1G05270; hit=AT1G05270; species=arabidopsis; confidence=high
Arabidopsis	`AT1G05270` (AT1G05270) TraB family protein [Source:NCBI gene (formerly Entrezgene);Acc:837027] identity=52.8; qcov=0.884; evalue=1.05e-94; confidence=high
Rice	`Os05g0499500` - identity=51.3; qcov=0.884; evalue=5.74e-87; confidence=high
GO	-
KEGG	-
Pfam	PF01963 (TraB_PrgY_gumN)
InterPro	-
eggNOG	-
NR	GeneID:131012662

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796633.1`
2	Mitochondrion membrane	线粒体膜	0.20000	`XP_057796632.1`
3	Chloroplast	叶绿体	0.20000	`XP_057796632.1`
4	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057796633.1`
5	Nucleus	细胞核	0.00000	`XP_057796632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:3316551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:3316591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B134,B57,C44,C83
`Chr2:3316598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,C84
`Chr2:3316653`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B104,D11
`Chr2:3316653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr2:3316739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:3318276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,B69
`Chr2:3318666`	`CG`	`C`	1bp_deletion	frameshift_variant	19	A7,B124,B21,B24,B40,B56,B65,B7,B70,B8,B96,C17,C21,C40,C47,C81,C87,D1,D4
`Chr2:3318668`	`ACG`	`A`	2bp_deletion	frameshift_variant	19	A7,B124,B21,B24,B40,B56,B65,B7,B70,B8,B96,C17,C21,C40,C47,C81,C87,D1,D4
`Chr2:3318706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B8,C21,C40,C47,D1
`Chr2:3319074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,C18,D4
`Chr2:3319077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,C18,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796632.1

331 aa

166

331

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 92-319 aa

XP_057796633.1

302 aa

151

302

TraB_PrgY_gumN

PF01963 TraB_PrgY_gumN 150-290 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796632.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	92	319	1.1e-23	85.2	TraB/PrgY/gumN family
`XP_057796633.1`	Pfam	`PF01963`	TraB_PrgY_gumN	Family	150	290	4.4e-22	79.9	TraB/PrgY/gumN family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940649.1
CTCGTTTCGAATGAGACGGGTCTAAAGCTACATTCCAAAAATTTCGCCCAAAATCGGCACTCAGTAGTCAGTACAGTAGCGAAAAGATGAACAGGTTCAATTCGGCCAAAAACCTCGTCGCTTTCTTCACCGCCGTCGCCCCCAATGCGAAAATCAGTCAGATTTTTGACAGCCGCTCTCTCGCCAGAATCCATCAGATTGCTGACCGCGGCAAATGTGAGAGGGAAATGGAGAAACAGCTGAAGAAGCTCTCGAGTAAT...

XM_057940650.1
CTCGTTTCGAATGAGACGGGTCTAAAGCTACATTCCAAAAATTTCGCCCAAAATCGGCACTCAGTAGTCAGTACAGTAGCGAAAAGATGAACAGGTTCAATTCGGCCAAAAACCTCGTCGCTTTCTTCACCGCCGTCGCCCCCAATGCGAAAATCAGTCAGATTTTTGACAGCCGCTCTCTCGCCAGAATCCATCAGATTGCTGACCGCGGCAAATGTGAGAGGGAAATGGAGAAACAGCTGAAGAAGCTCTCGAGTAAT...

CDS

2 records

下载 CDS FASTA

LOC131012662
ATGAACAGGTTCAATTCGGCCAAAAACCTCGTCGCTTTCTTCACCGCCGTCGCCCCCAATGCGAAAATCAGTCAGATTTTTGACAGCCGCTCTCTCGCCAGAATCCATCAGATTGCTGACCGCGGCAAATGTGAGAGGGAAATGGAGAAACAGCTGAAGAAGCTCTCGAGTAATGACAGTAACAGCAGTTATGAGAGGAAAGTGCTGCCGCCGGAGCTCTCGAGGAGTGTGGCTACGCTCACGTGCGAGTCGTCTGCGGC...

Protein

2 records

下载 Protein FASTA

XP_057796632.1
MNRFNSAKNLVAFFTAVAPNAKISQIFDSRSLARIHQIADRGKCEREMEKQLKKLSSNDSNSSYERKVLPPELSRSVATLTCESSAAGGVCDVYLVGTCHVSTESCEEVRAVIQFLKPQVVFLELCHRRKAVLKPQSSKKPTIGELFDVWKKEKESLLGILYSSYLRKVARQLEVEPGAEFRVAYEEAMKYDGKIILGDRPVQITLQRTWAMMPLGHKIKFFLKLFFRRPFFDISSGQVNSVIGPEDIAKRLKELNDVDN...

XP_057796633.1
MNRFNSAKNLVAFFTAVAPNAKISQIFDSRSLARIHQIADRGKCEREMEKQLKKLSSNDSNSSYERKVLPPELSRSVATLTCESSAAGGVCDVYLVGTCHVSTESCEEVRAVIQFLKPQVVFLELCHRRKAVLKPQSSKVARQLEVEPGAEFRVAYEEAMKYDGKIILGDRPVQITLQRTWAMMPLGHKIKFFLKLFFRRPFFDISSGQVNSVIGPEDIAKRLKELNDVDNLTRRIEKLSEEFPTLAEALIHERDQYMSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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